From: Andrei Zavada <johnhom...@gmail.com>
---
.../library/seqan/graph_msa/graph_align_tcoffee_io.h | 12 +++++++-----
1 file changed, 7 insertions(+), 5 deletions(-)
diff --git
a/mugsy-seqan/projects/library/seqan/graph_msa/graph_align_tcoffee_io.h
b/mugsy-seqan/projects/library/seqan/graph_msa/graph_align_tcoffee_io.h
index 0741c98..55f03be 100644
--- a/mugsy-seqan/projects/library/seqan/graph_msa/graph_align_tcoffee_io.h
+++ b/mugsy-seqan/projects/library/seqan/graph_msa/graph_align_tcoffee_io.h
@@ -514,11 +514,13 @@ template<typename TValue, typename TSpec2, typename
TFragment, typename TSpec, t
else
++offset2;
} else ++offset1;
- } else if (value(mat, inseq2 * flen + col) != gapChar)
- if(orients[inseq2])
- ++offset2;//--offset2;
- else
- ++offset2;
+ } else
+ if (value(mat, inseq2 * flen + col) != gapChar) {
+ if(orients[inseq2])
+ ++offset2;//--offset2;
+ else
+ ++offset2;
+ }
}
/*
//SVA append runs to matches
--
2.3.5
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