From: Andrei Zavada <johnhom...@gmail.com>
---
MUMmer3.20/src/tigr/repeat-match.cc | 2 +-
mugsy-seqan/projects/library/apps/mugsy/mugsy.cpp | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/MUMmer3.20/src/tigr/repeat-match.cc
b/MUMmer3.20/src/tigr/repeat-match.cc
index a4bf103..f7aa881 100644
--- a/MUMmer3.20/src/tigr/repeat-match.cc
+++ b/MUMmer3.20/src/tigr/repeat-match.cc
@@ -847,7 +847,7 @@ void List_Matches
{
if (Data [i - 1] == Data [j - 1]
|| Data [i + n] == Data [j + n]
- || i > String_Separator && j > String_Separator)
+ || (i > String_Separator && j > String_Separator))
continue;
Reversed = FALSE;
if (j > String_Separator)
diff --git a/mugsy-seqan/projects/library/apps/mugsy/mugsy.cpp
b/mugsy-seqan/projects/library/apps/mugsy/mugsy.cpp
index 177468e..da8f331 100644
--- a/mugsy-seqan/projects/library/apps/mugsy/mugsy.cpp
+++ b/mugsy-seqan/projects/library/apps/mugsy/mugsy.cpp
@@ -1187,7 +1187,7 @@ void doReadBlockFile(const std::string & filename,
//Check if segment is reported as part of the LCB
//The LCB identification step may not report all sequences that
are part of the anchor
if(sequenceOrientMap.find(sname) != sequenceOrientMap.end()){
- if(!checkbounds ||
fragmentBegin(g,*vit)>=sequenceCoordsMap[sname].first &&
fragmentBegin(g,*vit)<=sequenceCoordsMap[sname].second){
+ if(!checkbounds ||
(fragmentBegin(g,*vit)>=sequenceCoordsMap[sname].first &&
fragmentBegin(g,*vit)<=sequenceCoordsMap[sname].second)){ // -Wuse-spacebar,
ffs!
vertexOrientMap[*vit] = sequenceOrientMap[sname];
//add node to block
currlcb.push_back(*vit);
--
2.3.5
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