I already sent patch to upstream Le sam. 22 août 2015 18:01, Michael Crusoe <michael.cru...@gmail.com> a écrit :
> On Fri, Aug 21, 2015 at 11:05 PM olivier sallou <olivier.sal...@gmail.com> > wrote: > >> I had to patch trinity fot gcc5, did you test with this version? I have >> provided patch to upstream, and can give it to you if necessary >> > > Yeah, I just ran into those problems. Feel free to send the patch to me or > commit it directly. I'm sure upstream will appreciate them as well! > > >> >> Le sam. 22 août 2015 02:57, Michael Crusoe <michael.cru...@gmail.com> a >> écrit : >> >>> Hello again Olivier, >>> >>> Thank you for asking for an update on the trinityrnaseq related packages: >>> >>> trinityrnaseq: waiting on libjung-free-java, rsem, express, and >>> jaligner. Otherwise all the tests run successfully for me. >>> >>> libjung-free-java package: in NEW queue courtesy Olivier >>> https://ftp-master.debian.org/new/libjung-free-java_2.0.1-1.html >>> >>> rsem: waiting for r-bioc-ebseq; needs manpages, patch descriptions, add >>> new patches to add hardening flags >>> >>> r-bioc-ebseq: ready for sponsoring now that r-cran-blockmodeling is in >>> the archive >>> >>> express: now renamed to `berkeley-express` as 'bio-express' and >>> 'seq-express' have other significant Google hits. Needs a patch to add >>> hardening flags. >>> >>> jaligner: in NEW queue: >>> https://ftp-master.debian.org/new/jaligner_1.0-1.html >>> >>> === >>> >>> Any and all assistance you and the group can provide for the above would >>> be greatly appreciated! >>> >>> On Thu, Aug 20, 2015 at 11:32 PM olivier sallou <osal...@debian.org> >>> wrote: >>> >>>> Hi Michael, >>>> I was about to package trinityrnaseq when I found your ITP to package >>>> it. >>>> What is the status of the package? >>>> >>>> Thanks >>>> >>>> Olivier >>>> >>> -- >>> Michael R. Crusoe: Programmer & Bioinformatician cru...@ucdavis.edu >>> The lab for Data Intensive Biology; University of California, Davis >>> https://impactstory.org/MichaelRCrusoe http://twitter.com/biocrusoe >>> >> -- > Michael R. Crusoe: Programmer & Bioinformatician cru...@ucdavis.edu > The lab for Data Intensive Biology; University of California, Davis > https://impactstory.org/MichaelRCrusoe http://twitter.com/biocrusoe >
