On 08/22/2015 09:34 PM, Michael Crusoe wrote: > On Sat, Aug 22, 2015 at 6:49 AM Andreas Tille <andr...@an3as.eu > <mailto:andr...@an3as.eu>> wrote: > > Hi, > > On Sat, Aug 22, 2015 at 12:57:20AM +0000, Michael Crusoe wrote: > > > > trinityrnaseq: waiting on libjung-free-java, rsem, express, and > jaligner. > > Otherwise all the tests run successfully for me. > > I really hope that jaligner will make it soon - no idea why several > packages later in the queue made it way faster. > > > On the upside it is now the second oldest package in queue so > hopefully it will get some attention soon. > > > > > libjung-free-java package: in NEW queue courtesy Olivier > > https://ftp-master.debian.org/new/libjung-free-java_2.0.1-1.html > > > > rsem: waiting for r-bioc-ebseq; needs manpages, patch > descriptions, add new > > patches to add hardening flags > Usually it is related to CFLAGS/CXXFLAGS/ etc... not being "extended" but replaced in makefiles:
example: CFLAGS = -O3 instead of CFLAGS += -O3 and oflen LDFLAGS not being used at ld step > > > > r-bioc-ebseq: ready for sponsoring now that r-cran-blockmodeling > is in the > > archive > > Uploaded. > > > Thanks! > > > > > Any and all assistance you and the group can provide for the > above would be > > greatly appreciated! > > Please be more verbose if you see tasks I could do to support this. > > > Do have experience in what incantations it takes to add the hardening > build flags to recalcitrant packages? > -- > Michael R. Crusoe: Programmer & Bioinformatician cru...@ucdavis.edu > <mailto:cru...@ucdavis.edu> > The lab for Data Intensive Biology; University of California, Davis > https://impactstory.org/MichaelRCrusoe http://twitter.com/biocrusoe > > -- > gpg key id: 4096R/326D8438 (keyring.debian.org) > Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
