On 1/25/19 11:00 AM, Andreas Tille wrote: > On Fri, Jan 25, 2019 at 09:35:36AM +0100, olivier sallou wrote: >>> I fixed htsjdk and pushed fixes to git. I have not yet uploaded however, I >>> want to test if picard-tools still builds with this version. Will upload if >>> everything is ok (though some other packages depending on it may fail if >>> something is broken in API... as usual....) >> Bad news. Building picard-tools with new htsjdk fails. Some ~40 tests are >> failing. >> Tried to rebuild picard-tools with current htsjdk (to be sure it was not >> related to an other updated lib), and it works. So issue is with new htsjdk. >> >> picard-tools and htsjdk are too "linked" with specific versions... ;-( >> >> It is not a compilation issue, but testing results, so I cannot detect what >> is the problem for picard with this new release. >> >> htsjdk code is up-to-date in git, but uploading this version would break >> picard-tools. > Picard-tools has also a little bit newer version than we have. Would > you mind checking latest upstream? I'd asume that the both latest > versions should match.
good news, latest picard-tools (though a minor release) matches the latest htsjdk... I have uploaded htsjdk and once accepted will push picard-tools with requirements on this htsjdk release. We'll see if some other packages also have issues with htsjdk.... > > Kind regards > > Andreas. > -- Olivier Sallou Univ Rennes, Inria, CNRS, IRISA Irisa, Campus de Beaulieu F-35042 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438