Hi Andreas, I would be happy to help on artemis. Obviously I will need a more experienced developer helping me. :)
Cheers! Emmanuel Cheers, Arias Emmanuel @eamanu yaerobi.com On Mon, Jun 22, 2020 at 9:17 AM Andreas Tille <andr...@an3as.eu> wrote: > Hi, > > we are lagging several upstream versions behind due to new dependencies > and other build issues. I wonder whether somebody might volunteer to > update artemis. It would be great to get the latest version at least > before the freeze starts. While this takes some time I guess having > latest artemis is time consuming as well - thus I'm asking here. > > Any takers? Despite I'm the only remaining Uploader this exceeds my > current time capacity. > > Kind regards > > Andreas. > > On Sun, Jun 21, 2020 at 10:26:05PM +0200, Lucas Nussbaum wrote: > > Source: artemis > > Version: 17.0.1+dfsg-2 > > Severity: serious > > Justification: FTBFS on amd64 > > Tags: bullseye sid ftbfs > > Usertags: ftbfs-20200620 ftbfs-bullseye > > > > Hi, > > > > During a rebuild of all packages in sid, your package failed to build > > on amd64. > > > > Relevant part (hopefully): > > > debian/rules build > > > dh build --with javahelper > > > dh_update_autotools_config > > > dh_autoreconf > > > dh_auto_configure > > > jh_linkjars > > > debian/rules override_dh_auto_build > > > make[1]: Entering directory '/<<PKGBUILDDIR>>' > > > dh_auto_build -- jar > > > make -j4 "INSTALL=install --strip-program=true" jar > > > make[2]: Entering directory '/<<PKGBUILDDIR>>' > > > CLASSPATH=/usr/share/java/biojava.jar /usr/share/java/j2ssh-core.jar > /usr/share/java/ibatis.jar /usr/share/java/log4j-1.2.jar > /usr/share/java/postgresql-jdbc3.jar /usr/share/java/picard.jar > /usr/share/java/htsjdk.jar /usr/share/java/commons-net.jar > /usr/share/java/commons-lang3.jar /usr/share/java/batik-all.jar > /usr/share/java/batik-awt-util.jar /usr/share/java/batik-dom.jar > /usr/share/java/batik-ext.jar /usr/share/java/batik-svggen.jar > /usr/share/java/batik-util.jar /usr/share/java/batik-xml.jar > /usr/share/EMBOSS/jemboss/lib/jemboss.jar /<<PKGBUILDDIR>>: javac -source > 1.8 -target 1.8 uk/ac/sanger/artemis/Action.java > > > CLASSPATH=/usr/share/java/biojava.jar /usr/share/java/j2ssh-core.jar > /usr/share/java/ibatis.jar /usr/share/java/log4j-1.2.jar > /usr/share/java/postgresql-jdbc3.jar /usr/share/java/picard.jar > /usr/share/java/htsjdk.jar /usr/share/java/commons-net.jar > /usr/share/java/commons-lang3.jar /usr/share/java/batik-all.jar > /usr/share/java/batik-awt-util.jar /usr/share/java/batik-dom.jar > /usr/share/java/batik-ext.jar /usr/share/java/batik-svggen.jar > /usr/share/java/batik-util.jar /usr/share/java/batik-xml.jar > /usr/share/EMBOSS/jemboss/lib/jemboss.jar /<<PKGBUILDDIR>>: javac -source > 1.8 -target 1.8 uk/ac/sanger/artemis/ActionController.java > > > /bin/sh: 1: /usr/share/java/j2ssh-core.jar: Permission denied > > > make[2]: *** [Makefile:48: uk/ac/sanger/artemis/Action.class] Error 126 > > > > The full build log is available from: > > > http://qa-logs.debian.net/2020/06/20/artemis_17.0.1+dfsg-2_unstable.log > > > > A list of current common problems and possible solutions is available at > > http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to > contribute! > > > > About the archive rebuild: The rebuild was done on EC2 VM instances from > > Amazon Web Services, using a clean, minimal and up-to-date chroot. Every > > failed build was retried once to eliminate random failures. > > > > _______________________________________________ > > Debian-med-packaging mailing list > > debian-med-packag...@alioth-lists.debian.net > > > https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-packaging > > -- > http://fam-tille.de > >
