This is great news, thank you for this, Hervé. For now I think the most important bit is to have anything that is automated in some reasonable way. And then let's extend that over time. This should give edam annotation a particular boost, I tend to think.
You may be aware of an earlier email in which I described the Google Spreadsheet https://docs.google.com/spreadsheets/d/1tApLhVqxRZ2VOuMH_aPUgFENQJfbLlB_PFH_Ah_q7hM/edit?usp=sharing to provide an overview on what packages (rows) are important for which workflows (columns). Now imagine what EDAM could do for us along those lines. @Jon,Matúš, should we possibly do some bulk EDAM annotation just for the packages on this "virus" tab? I suggest several iterations, like Topics first to provide the summary scope and I/O+File formats second for the individual executables once we know more about it all. Best, Steffen On 25.07.20 16:33, Andreas Tille wrote: > Hi Hervé > > On Sat, Jul 25, 2020 at 12:43:08AM +0200, Hervé Ménager wrote: >> Hello Steffen, everyone, >> This is to let you know I am currently attending the BCC virtual hackathon ( >> https://bcc2020.github.io/cofest/). With a couple of other people, I have >> been working on the Tools Platform Ecosystem ( >> https://github.com/bio-tools/content/), continuing among other things the >> work we have been doing with you and others over the years to integrate >> metadata from Debian Med packages and bio.tools (among others). >> I have finalized a first working version of this work, but I took the >> liberty to modify the biotoolsConnect repository, esp. the script you have >> created Steffen, to correct a few things. I did so on github ( >> https://github.com/bio-tools/biotoolsConnect) but I know this is a mirror >> to a repository on Salsa. > I do not think there is a mirror on Salsa. I've just developed edam.sh > there as a *simple example*. I admit I'm a bit astonished that > edamJson2biotools.py is parsing the output of this *example* script > instead of using the query directly inside the Python script. > >> If you need me to do something to synchronize >> with this other repository, please tell me (and tell me how). > I think there is no need to syncronise. Its not used there. > >> Thanks a lot for your hard work on this subject. > You are welcome and thanks for your support > > Andreas. >
