Hi Alex, hi Andreas, This is what I get when I remove the -1
make[1]: Leaving directory '.../med-team/libgclib' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libgclib2/DEBIAN/symbols doesn't match completely debian/libgclib2.symbols --- debian/libgclib2.symbols (libgclib2_0.11.10-1_amd64) +++ dpkg-gensymbolsGWl6pJ 2020-08-09 14:16:35.796448318 +0200 @@ -25,7 +25,7 @@ _Z10g2bit2baseh@Base 0.11.4 _Z10gcdb_allocj@Base 0.11.4 _Z10getFileExtPKc@Base 0.11.4 - _Z10getOvlCodeR6GffObjS0_Rib@Base 0.11.10 +#MISSING: 0.11.10-1# _Z10getOvlCodeR6GffObjS0_Rib@Base 0.11.10 _Z10getOvlCodeR6GffObjS0_Ribi@Base 0.11.10 _Z10parseFloatRPcRf@Base 0.11.4 _Z10replaceStrRPcS_@Base 0.11.4 @@ -79,13 +79,13 @@ _Z14gfo_cmpRefByIDPvS_@Base 0.11.4 _Z14translateCodonPKc@Base 0.11.4 _Z15printEditScriptP12GXEditScript@Base 0.11.4 - _Z15transcriptMatchR6GffObjS0_Ri@Base 0.11.10 +#MISSING: 0.11.10-1# _Z15transcriptMatchR6GffObjS0_Ri@Base 0.11.10 _Z15transcriptMatchR6GffObjS0_Rii@Base 0.11.10 _Z15uint32_pack_bigPcj@Base 0.11.4 _Z16BED_addAttributeP8_IO_FILERiPKcz@Base 0.11.4 _Z16DefLTCompareProcI4GSegEiPvS1_@Base 0.11.4 _Z16gthreads_errExitiPKc@Base 0.11.4 - _Z16singleExonTMatchR6GffObjS0_Ri@Base 0.11.10 +#MISSING: 0.11.10-1# _Z16singleExonTMatchR6GffObjS0_Ri@Base 0.11.10 _Z16singleExonTMatchR6GffObjS0_Rii@Base 0.11.10 _Z17GreedyAlignRegionPKciiS0_iiP16CGreedyAlignDataP8CAlnTrimb@Base 0.11.4 _Z17GreedyAlignRegionPKciiS0_iiiiiP16CGreedyAlignDataP8CAlnTrimb@Base 0.11.4 dh_makeshlibs: error: failing due to earlier errors make: *** [debian/rules:13: binary] Error 1 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 ? Steffen On 09.08.20 07:00, Andreas Tille wrote: > Hi Steffen, > > the patch you get from dh_makeshlibs needs to be edited. You simply > > sed -i 's/-1$//' debian/libgclib2.symbols > > should do the trick. > > Hope this helps > > Andreas. > > On Sat, Aug 08, 2020 at 11:39:24PM +0200, Steffen Möller wrote: >> Hello, >> >> to get the build process to first not fail and then be quiet, I changed >> the .symbols file as follows: >> >> diff --git a/debian/libgclib2.symbols b/debian/libgclib2.symbols >> index 6bef43a..aef012c 100644 >> --- a/debian/libgclib2.symbols >> +++ b/debian/libgclib2.symbols >> @@ -25,7 +25,8 @@libgclib.so.2 libgclib2 #MINVER# >> _Z10g2bit2baseh@Base 0.11.4 >> _Z10gcdb_allocj@Base 0.11.4 >> _Z10getFileExtPKc@Base 0.11.4 >> - _Z10getOvlCodeR6GffObjS0_Rib@Base 0.11.4 >> + _Z10getOvlCodeR6GffObjS0_Rib@Base 0.11.10-1 >> + _Z10getOvlCodeR6GffObjS0_Ribi@Base 0.11.10-1 >> _Z10parseFloatRPcRf@Base 0.11.4 >> _Z10replaceStrRPcS_@Base 0.11.4 >> _Z10startsWithPKcS0_@Base 0.11.4 >> @@ -78,12 +79,15 @@libgclib.so.2 libgclib2 #MINVER# >> _Z14gfo_cmpRefByIDPvS_@Base 0.11.4 >> _Z14translateCodonPKc@Base 0.11.4 >> _Z15printEditScriptP12GXEditScript@Base 0.11.4 >> - _Z15transcriptMatchR6GffObjS0_Ri@Base 0.11.4 >> + _Z15transcriptMatchR6GffObjS0_Ri@Base 0.11.10-1 >> + _Z15transcriptMatchR6GffObjS0_Rii@Base 0.11.10-1 >> _Z15uint32_pack_bigPcj@Base 0.11.4 >> _Z16BED_addAttributeP8_IO_FILERiPKcz@Base 0.11.4 >> _Z16DefLTCompareProcI4GSegEiPvS1_@Base 0.11.4 >> _Z16gthreads_errExitiPKc@Base 0.11.4 >> - _Z16singleExonTMatchR6GffObjS0_Ri@Base 0.11.4 >> + _Z16singleExonTMatchR6GffObjS0_Ri@Base 0.11.10-1 >> + _Z16singleExonTMatchR6GffObjS0_Rii@Base 0.11.10-1 >> + _Z15transcriptMatchR6GffObjS0_Rii@Base 0.11.10-1 >> _Z17GreedyAlignRegionPKciiS0_iiP16CGreedyAlignDataP8CAlnTrimb@Base 0.11.4 >> _Z17GreedyAlignRegionPKciiS0_iiiiiP16CGreedyAlignDataP8CAlnTrimb@Base >> 0.11.4 >> _Z17gcvt_endian_setupv@Base 0.11.4 >> >> I have no idea why there is now a -1 attached to the version. I just >> know that it does not work without it. >> >> Can I upload as is? >> >> Best, >> >> Steffen >> >>
