Hi Steffen,
I've pushed the new version of symbols file to the repository.
As far as I see in the new version of libgclib the 3 symbols ( the ones
in the diff you provided) are removed. This is quite bad and probably it
makes sense to discuss that with upstream, since software using these
symbols will be broken.
Luckily none of the reverse deps of libgclib in Debian are using the
removed symbols.
Best regards,
Ale
On 8/9/20 4:33 PM, Steffen Möller wrote:
Hi Alex, hi Andreas,
This is what I get when I remove the -1
make[1]: Leaving directory '.../med-team/libgclib'
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dpkg-gensymbols: error: some symbols or patterns disappeared in the
symbols file: see diff output below
dpkg-gensymbols: warning: debian/libgclib2/DEBIAN/symbols doesn't match
completely debian/libgclib2.symbols
--- debian/libgclib2.symbols (libgclib2_0.11.10-1_amd64)
+++ dpkg-gensymbolsGWl6pJ 2020-08-09 14:16:35.796448318 +0200
@@ -25,7 +25,7 @@
_Z10g2bit2baseh@Base 0.11.4
_Z10gcdb_allocj@Base 0.11.4
_Z10getFileExtPKc@Base 0.11.4
- _Z10getOvlCodeR6GffObjS0_Rib@Base 0.11.10
+#MISSING: 0.11.10-1# _Z10getOvlCodeR6GffObjS0_Rib@Base 0.11.10
_Z10getOvlCodeR6GffObjS0_Ribi@Base 0.11.10
_Z10parseFloatRPcRf@Base 0.11.4
_Z10replaceStrRPcS_@Base 0.11.4
@@ -79,13 +79,13 @@
_Z14gfo_cmpRefByIDPvS_@Base 0.11.4
_Z14translateCodonPKc@Base 0.11.4
_Z15printEditScriptP12GXEditScript@Base 0.11.4
- _Z15transcriptMatchR6GffObjS0_Ri@Base 0.11.10
+#MISSING: 0.11.10-1# _Z15transcriptMatchR6GffObjS0_Ri@Base 0.11.10
_Z15transcriptMatchR6GffObjS0_Rii@Base 0.11.10
_Z15uint32_pack_bigPcj@Base 0.11.4
_Z16BED_addAttributeP8_IO_FILERiPKcz@Base 0.11.4
_Z16DefLTCompareProcI4GSegEiPvS1_@Base 0.11.4
_Z16gthreads_errExitiPKc@Base 0.11.4
- _Z16singleExonTMatchR6GffObjS0_Ri@Base 0.11.10
+#MISSING: 0.11.10-1# _Z16singleExonTMatchR6GffObjS0_Ri@Base 0.11.10
_Z16singleExonTMatchR6GffObjS0_Rii@Base 0.11.10
_Z17GreedyAlignRegionPKciiS0_iiP16CGreedyAlignDataP8CAlnTrimb@Base 0.11.4
_Z17GreedyAlignRegionPKciiS0_iiiiiP16CGreedyAlignDataP8CAlnTrimb@Base
0.11.4
dh_makeshlibs: error: failing due to earlier errors
make: *** [debian/rules:13: binary] Error 1
dpkg-buildpackage: error: debian/rules binary subprocess returned exit
status 2
?
Steffen
On 09.08.20 07:00, Andreas Tille wrote:
Hi Steffen,
the patch you get from dh_makeshlibs needs to be edited. You simply
sed -i 's/-1$//' debian/libgclib2.symbols
should do the trick.
Hope this helps
Andreas.
On Sat, Aug 08, 2020 at 11:39:24PM +0200, Steffen Möller wrote:
Hello,
to get the build process to first not fail and then be quiet, I changed
the .symbols file as follows:
diff --git a/debian/libgclib2.symbols b/debian/libgclib2.symbols
index 6bef43a..aef012c 100644
--- a/debian/libgclib2.symbols
+++ b/debian/libgclib2.symbols
@@ -25,7 +25,8 @@libgclib.so.2 libgclib2 #MINVER#
_Z10g2bit2baseh@Base 0.11.4
_Z10gcdb_allocj@Base 0.11.4
_Z10getFileExtPKc@Base 0.11.4
- _Z10getOvlCodeR6GffObjS0_Rib@Base 0.11.4
+ _Z10getOvlCodeR6GffObjS0_Rib@Base 0.11.10-1
+ _Z10getOvlCodeR6GffObjS0_Ribi@Base 0.11.10-1
_Z10parseFloatRPcRf@Base 0.11.4
_Z10replaceStrRPcS_@Base 0.11.4
_Z10startsWithPKcS0_@Base 0.11.4
@@ -78,12 +79,15 @@libgclib.so.2 libgclib2 #MINVER#
_Z14gfo_cmpRefByIDPvS_@Base 0.11.4
_Z14translateCodonPKc@Base 0.11.4
_Z15printEditScriptP12GXEditScript@Base 0.11.4
- _Z15transcriptMatchR6GffObjS0_Ri@Base 0.11.4
+ _Z15transcriptMatchR6GffObjS0_Ri@Base 0.11.10-1
+ _Z15transcriptMatchR6GffObjS0_Rii@Base 0.11.10-1
_Z15uint32_pack_bigPcj@Base 0.11.4
_Z16BED_addAttributeP8_IO_FILERiPKcz@Base 0.11.4
_Z16DefLTCompareProcI4GSegEiPvS1_@Base 0.11.4
_Z16gthreads_errExitiPKc@Base 0.11.4
- _Z16singleExonTMatchR6GffObjS0_Ri@Base 0.11.4
+ _Z16singleExonTMatchR6GffObjS0_Ri@Base 0.11.10-1
+ _Z16singleExonTMatchR6GffObjS0_Rii@Base 0.11.10-1
+ _Z15transcriptMatchR6GffObjS0_Rii@Base 0.11.10-1
_Z17GreedyAlignRegionPKciiS0_iiP16CGreedyAlignDataP8CAlnTrimb@Base 0.11.4
_Z17GreedyAlignRegionPKciiS0_iiiiiP16CGreedyAlignDataP8CAlnTrimb@Base
0.11.4
_Z17gcvt_endian_setupv@Base 0.11.4
I have no idea why there is now a -1 attached to the version. I just
know that it does not work without it.
Can I upload as is?
Best,
Steffen
