Le Tue, Jul 27, 2021 at 12:02:00PM +0200, Steffen Möller a écrit : > > fastx-toolkit https://tracker.debian.org/pkg/fastx-toolkit ran into a > bug in one of its dependencies and was removed for that reason. > ArrayExpressHTS still depends on fasta_formatter from that library.
Hi Steffen, I had a quick look (git grep) at the source code of ArrayExpressHTS and although it has an option to indicate the path to fasta_formatter, it appears to never use it. As a control, you can git grep other external tools (samtools, mmseq, ...) and you will see that, in contrary to the search with fasta_formatter, it returns lines of code that do construct a shell command using the path to the tool. So if I am not mistaken, maybe we can just drop its dependancy ? Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from work, https://mastodon.technology/@charles_plessy Tooting from home, https://framapiaf.org/@charles_plessy