At worst, can't you just disable the test suite for the Python 3 builds ? Pybuild should allow to do that easily.
Ghis 2014-11-24 16:36 GMT+00:00 Jorge Sebastião Soares <j.s.soa...@gmail.com>: > Hi guys, > > So essentially the package build halts when it tries to run the test suite: > > This is the error I'm getting when the pysam module is being imported: > > root@debian:~/iva-0.10.0# python3.4 setup.py test > running test > running egg_info > writing top-level names to iva.egg-info/top_level.txt > writing iva.egg-info/PKG-INFO > writing dependency_links to iva.egg-info/dependency_links.txt > reading manifest file 'iva.egg-info/SOURCES.txt' > writing manifest file 'iva.egg-info/SOURCES.txt' > running build_ext > Failure: ImportError (No module named 'pysam') ... ERROR > > ====================================================================== > ERROR: Failure: ImportError (No module named 'pysam') > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/usr/lib/python3/dist-packages/nose/failure.py", line 39, in > runTest > raise self.exc_val.with_traceback(self.tb) > File "/usr/lib/python3/dist-packages/nose/loader.py", line 414, in > loadTestsFromName > addr.filename, addr.module) > File "/usr/lib/python3/dist-packages/nose/importer.py", line 47, in > importFromPath > return self.importFromDir(dir_path, fqname) > File "/usr/lib/python3/dist-packages/nose/importer.py", line 94, in > importFromDir > mod = load_module(part_fqname, fh, filename, desc) > File "/usr/lib/python3.4/imp.py", line 245, in load_module > return load_package(name, filename) > File "/usr/lib/python3.4/imp.py", line 217, in load_package > return methods.load() > File "<frozen importlib._bootstrap>", line 1220, in load > File "<frozen importlib._bootstrap>", line 1200, in _load_unlocked > File "<frozen importlib._bootstrap>", line 1129, in _exec > File "<frozen importlib._bootstrap>", line 1471, in exec_module > File "<frozen importlib._bootstrap>", line 321, in > _call_with_frames_removed > File "/tmp/buildd/iva-0.10.0/iva/__init__.py", line 20, in <module> > from iva import * > File "/tmp/buildd/iva-0.10.0/iva/assembly.py", line 2, in <module> > import pysam > ImportError: No module named 'pysam' > > ---------------------------------------------------------------------- > Ran 1 test in 0.016s > > FAILED (errors=1) > > > If pysam is python 3 compliant, I'm tempted to create the needed symlinks > in python3.4 pointing to pysam in python2.7, eg. > > ln -s /usr/lib/python2.7/dist-packages/pysam > /usr/lib/python3.4/dist-packages/pysam > > I'm sure that this is not the proper way of doing things, so is there any > other way I can get pysam to be installed under python3.4 rather than > python2.7? > > Regards, > > Jorge >
