Hi Ghis, Disabling the tests worked.
The package builds at least, but not lintian clean . I'll cary on tomorrow. Regards, Jorge On Mon, Nov 24, 2014 at 5:02 PM, Jorge Sebastião Soares < j.s.soa...@gmail.com> wrote: > Hi Ghis > > On Mon, Nov 24, 2014 at 4:58 PM, Ghislain Vaillant <ghisv...@gmail.com> > wrote: > >> At worst, can't you just disable the test suite for the Python 3 builds ? >> Pybuild should allow to do that easily. >> > > Trying that now. > > But I would still need to link pysam to the iva package at some point, no? > > Regards, > > Jorge > > > >> 2014-11-24 16:36 GMT+00:00 Jorge Sebastião Soares <j.s.soa...@gmail.com>: >> >>> Hi guys, >>> >>> So essentially the package build halts when it tries to run the test >>> suite: >>> >>> This is the error I'm getting when the pysam module is being imported: >>> >>> root@debian:~/iva-0.10.0# python3.4 setup.py test >>> running test >>> running egg_info >>> writing top-level names to iva.egg-info/top_level.txt >>> writing iva.egg-info/PKG-INFO >>> writing dependency_links to iva.egg-info/dependency_links.txt >>> reading manifest file 'iva.egg-info/SOURCES.txt' >>> writing manifest file 'iva.egg-info/SOURCES.txt' >>> running build_ext >>> Failure: ImportError (No module named 'pysam') ... ERROR >>> >>> ====================================================================== >>> ERROR: Failure: ImportError (No module named 'pysam') >>> ---------------------------------------------------------------------- >>> Traceback (most recent call last): >>> File "/usr/lib/python3/dist-packages/nose/failure.py", line 39, in >>> runTest >>> raise self.exc_val.with_traceback(self.tb) >>> File "/usr/lib/python3/dist-packages/nose/loader.py", line 414, in >>> loadTestsFromName >>> addr.filename, addr.module) >>> File "/usr/lib/python3/dist-packages/nose/importer.py", line 47, in >>> importFromPath >>> return self.importFromDir(dir_path, fqname) >>> File "/usr/lib/python3/dist-packages/nose/importer.py", line 94, in >>> importFromDir >>> mod = load_module(part_fqname, fh, filename, desc) >>> File "/usr/lib/python3.4/imp.py", line 245, in load_module >>> return load_package(name, filename) >>> File "/usr/lib/python3.4/imp.py", line 217, in load_package >>> return methods.load() >>> File "<frozen importlib._bootstrap>", line 1220, in load >>> File "<frozen importlib._bootstrap>", line 1200, in _load_unlocked >>> File "<frozen importlib._bootstrap>", line 1129, in _exec >>> File "<frozen importlib._bootstrap>", line 1471, in exec_module >>> File "<frozen importlib._bootstrap>", line 321, in >>> _call_with_frames_removed >>> File "/tmp/buildd/iva-0.10.0/iva/__init__.py", line 20, in <module> >>> from iva import * >>> File "/tmp/buildd/iva-0.10.0/iva/assembly.py", line 2, in <module> >>> import pysam >>> ImportError: No module named 'pysam' >>> >>> ---------------------------------------------------------------------- >>> Ran 1 test in 0.016s >>> >>> FAILED (errors=1) >>> >>> >>> If pysam is python 3 compliant, I'm tempted to create the needed >>> symlinks in python3.4 pointing to pysam in python2.7, eg. >>> >>> ln -s /usr/lib/python2.7/dist-packages/pysam >>> /usr/lib/python3.4/dist-packages/pysam >>> >>> I'm sure that this is not the proper way of doing things, so is there >>> any other way I can get pysam to be installed under python3.4 rather than >>> python2.7? >>> >>> Regards, >>> >>> Jorge >>> >> >> >
