Your message dated Tue, 05 Apr 2016 19:13:21 +0800
with message-id <1459854801.11409.22.ca...@debian.org>
and subject line Re: Bug#816101: petsc: FTBFS on mipsel - broken openmpi breaks
petsc build
has caused the Debian Bug report #816101,
regarding FTBFS on mipsel - broken openmpi breaks petsc build
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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816101: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=816101
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: petsc
Version: 3.6.2.dfsg1-3
Severity: serious
Justification: fails to build from source (but built successfully in the past)
Hi,
petsc FTBFS on mipsel:
https://buildd.debian.org/status/fetch.php?pkg=petsc&arch=mipsel&ver=3.6.2.dfsg1-3%2Bb3&stamp=1455322055
dh_auto_test -plibpetsc3.6.2-dbg -- \
PETSC_DIR=/«PKGBUILDDIR» PETSC_ARCH=mipsel-linux-gnu-real-debug \
LD_LIBRARY_PATH=:/«PKGBUILDDIR»/mipsel-linux-gnu-real-debug/lib
make -j1 test PETSC_DIR=/«PKGBUILDDIR»
PETSC_ARCH=mipsel-linux-gnu-real-debug
LD_LIBRARY_PATH=:/«PKGBUILDDIR»/mipsel-linux-gnu-real-debug/lib
make[2]: Entering directory '/«PKGBUILDDIR»'
Running test examples to verify correct installation
Using PETSC_DIR=/«PKGBUILDDIR» and PETSC_ARCH=mipsel-linux-gnu-real-debug
r detected during compile or link!*******************
See http://www.mcs.anl.gov/petsc/documentation/faq.html
/«PKGBUILDDIR»/src/snes/examples/tutorials ex19
********************************************************************************cxx
-o ex19.o -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security
-fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I/«PKGBUILDDIR»/include
-I/«PKGBUILDDIR»/mipsel-linux-gnu-real-debug/include -I/usr/include/suitesparse
-I/usr/include/superlu -I/usr/include -I/usr/include/scotch
-I/usr/lib/openmpi/include
-I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent
-I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include
-I/usr/lib/openmpi/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2
`pwd`/ex19.c
mpicxx -Wl,-z,relro -Wl,--no-as-needed -g -O2 -fstack-protector-strong -Wformat
-Werror=format-security -o ex19 ex19.o
-L/«PKGBUILDDIR»/mipsel-linux-gnu-real-debug/lib
-L/«PKGBUILDDIR»/mipsel-linux-gnu-real-debug/lib -lpetsc_real -ldmumps
-lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lumfpack -lamd -lcholmod
-lklu -lsuperlu -lscalapack-openmpi -L/usr/lib -lHYPRE_utilities
-lHYPRE_struct_mv -lHYPRE_struct_ls -lHYPRE_sstruct_mv -lHYPRE_sstruct_ls
-lHYPRE_IJ_mv -lHYPRE_parcsr_ls -llapack -lblas -lptesmumps -lptscotch
-lptscotcherr -lfftw3 -lfftw3_mpi -lhwloc -lssl -lcrypto -lm
-L/usr/lib/openmpi/lib -L/usr/lib/gcc/mipsel-linux-gnu/5
-L/usr/lib/mipsel-linux-gnu -L/lib/mipsel-linux-gnu -lmpi_usempif08
-lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -lgfortran -lm -lmpi_cxx
-lstdc++ -L/usr/lib/openmpi/lib -L/usr/lib/gcc/mipsel-linux-gnu/5
-L/usr/lib/mipsel-linux-gnu -L/lib/mipsel-linux-gnu -L/usr/lib/mipsel-linux-gnu
-ldl -L/usr/lib/openmpi/lib -lmpi -lgcc_s -lpthread -ldl
/bin/rm -f ex19.o
Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 MPI process
See http://www.mcs.anl.gov/petsc/documentation/faq.html
--------------------------------------------------------------------------
A deprecated MCA variable value was specified in the environment or
on the command line. Deprecated MCA variables should be avoided;
they may disappear in future releases.
Deprecated variable: orte_rsh_agent
New variable: plm_rsh_agent
--------------------------------------------------------------------------
lid velocity = 0.0016, prandtl # = 1, grashof # = 1
Number of SNES iterations = 2
make[2]: *** wait: No child processes. Stop.
make[2]: *** Waiting for unfinished jobs....
make[2]: *** wait: No child processes. Stop.
debian/rules:181: recipe for target 'override_dh_auto_test' failed
make[1]: *** [override_dh_auto_test] Terminated
E: Caught signal ‘Terminated’: terminating immediately
debian/rules:106: recipe for target 'build-arch' failed
make: *** [build-arch] Terminated
Build killed with signal TERM after 150 minutes of inactivity
*
--- End Message ---
--- Begin Message ---
affects 818909 src:petsc
thanks
"affects" is more correct than "blocks"
i.e. the bug is in openmpi not petsc
--- End Message ---
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