Your message dated Mon, 25 Apr 2016 06:49:31 +0000 with message-id <e1auakp-0006ib...@franck.debian.org> and subject line Bug#816101: fixed in petsc 3.6.3.dfsg2-5 has caused the Debian Bug report #816101, regarding FTBFS on mipsel/powerpc - broken openmpi breaks petsc build to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 816101: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=816101 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: petsc Version: 3.6.2.dfsg1-3 Severity: serious Justification: fails to build from source (but built successfully in the past) Hi, petsc FTBFS on mipsel: https://buildd.debian.org/status/fetch.php?pkg=petsc&arch=mipsel&ver=3.6.2.dfsg1-3%2Bb3&stamp=1455322055 dh_auto_test -plibpetsc3.6.2-dbg -- \ PETSC_DIR=/«PKGBUILDDIR» PETSC_ARCH=mipsel-linux-gnu-real-debug \ LD_LIBRARY_PATH=:/«PKGBUILDDIR»/mipsel-linux-gnu-real-debug/lib make -j1 test PETSC_DIR=/«PKGBUILDDIR» PETSC_ARCH=mipsel-linux-gnu-real-debug LD_LIBRARY_PATH=:/«PKGBUILDDIR»/mipsel-linux-gnu-real-debug/lib make[2]: Entering directory '/«PKGBUILDDIR»' Running test examples to verify correct installation Using PETSC_DIR=/«PKGBUILDDIR» and PETSC_ARCH=mipsel-linux-gnu-real-debug r detected during compile or link!******************* See http://www.mcs.anl.gov/petsc/documentation/faq.html /«PKGBUILDDIR»/src/snes/examples/tutorials ex19 ********************************************************************************cxx -o ex19.o -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/mipsel-linux-gnu-real-debug/include -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include -I/usr/include/scotch -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 `pwd`/ex19.c mpicxx -Wl,-z,relro -Wl,--no-as-needed -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -o ex19 ex19.o -L/«PKGBUILDDIR»/mipsel-linux-gnu-real-debug/lib -L/«PKGBUILDDIR»/mipsel-linux-gnu-real-debug/lib -lpetsc_real -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lumfpack -lamd -lcholmod -lklu -lsuperlu -lscalapack-openmpi -L/usr/lib -lHYPRE_utilities -lHYPRE_struct_mv -lHYPRE_struct_ls -lHYPRE_sstruct_mv -lHYPRE_sstruct_ls -lHYPRE_IJ_mv -lHYPRE_parcsr_ls -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lfftw3 -lfftw3_mpi -lhwloc -lssl -lcrypto -lm -L/usr/lib/openmpi/lib -L/usr/lib/gcc/mipsel-linux-gnu/5 -L/usr/lib/mipsel-linux-gnu -L/lib/mipsel-linux-gnu -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -lgfortran -lm -lmpi_cxx -lstdc++ -L/usr/lib/openmpi/lib -L/usr/lib/gcc/mipsel-linux-gnu/5 -L/usr/lib/mipsel-linux-gnu -L/lib/mipsel-linux-gnu -L/usr/lib/mipsel-linux-gnu -ldl -L/usr/lib/openmpi/lib -lmpi -lgcc_s -lpthread -ldl /bin/rm -f ex19.o Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 MPI process See http://www.mcs.anl.gov/petsc/documentation/faq.html -------------------------------------------------------------------------- A deprecated MCA variable value was specified in the environment or on the command line. Deprecated MCA variables should be avoided; they may disappear in future releases. Deprecated variable: orte_rsh_agent New variable: plm_rsh_agent -------------------------------------------------------------------------- lid velocity = 0.0016, prandtl # = 1, grashof # = 1 Number of SNES iterations = 2 make[2]: *** wait: No child processes. Stop. make[2]: *** Waiting for unfinished jobs.... make[2]: *** wait: No child processes. Stop. debian/rules:181: recipe for target 'override_dh_auto_test' failed make[1]: *** [override_dh_auto_test] Terminated E: Caught signal ‘Terminated’: terminating immediately debian/rules:106: recipe for target 'build-arch' failed make: *** [build-arch] Terminated Build killed with signal TERM after 150 minutes of inactivity *
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--- Begin Message ---Source: petsc Source-Version: 3.6.3.dfsg2-5 We believe that the bug you reported is fixed in the latest version of petsc, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 816...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Drew Parsons <dpars...@debian.org> (supplier of updated petsc package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Mon, 25 Apr 2016 13:09:18 +0800 Source: petsc Binary: libpetsc3.6-dev libpetsc3.6.3-dev petsc-dev libpetsc3.6.3 libpetsc3.6.3-dbg petsc3.6.3-doc libpetsc-complex-3.6-dev libpetsc-complex-3.6.3-dev libpetsc-complex-3.6.3 libpetsc-complex-3.6.3-dbg Architecture: source amd64 all Version: 3.6.3.dfsg2-5 Distribution: unstable Urgency: medium Maintainer: Drew Parsons <dpars...@debian.org> Changed-By: Drew Parsons <dpars...@debian.org> Description: libpetsc-complex-3.6-dev - Static libraries, shared links, header files for PETSc libpetsc-complex-3.6.3 - Shared libraries for version 3.6 of PETSc with Complex Numbers libpetsc-complex-3.6.3-dbg - Debugging libraries for PETSc libpetsc-complex-3.6.3-dev - Static libraries, shared links, header files for PETSc libpetsc3.6-dev - Static libraries, shared links, header files for PETSc libpetsc3.6.3 - Shared libraries for version 3.6 of PETSc libpetsc3.6.3-dbg - Debugging libraries for PETSc libpetsc3.6.3-dev - Static libraries, shared links, header files for PETSc petsc-dev - Virtual package depending on latest PETSc development package petsc3.6.3-doc - Documentation and examples for PETSc Closes: 816101 Changes: petsc (3.6.3.dfsg2-5) unstable; urgency=medium . * New patch test_mpi_conditional_bug816101 disables test of ex19 on 2 MPI processes on mipsel and powerpc, working around intermittent timeouts. Closes: #816101. 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