I'm running into a little problem compiling 2.0.0-rc7 on OSX 10.6.8. When I
make with HAVE_LIBZ=y, I get the following error:
mpicxx -lz code/TheRayGenomeAssembler.a RayPlatform/libRayPlatform.a -o Ray
Undefined symbols:
"FastqGzLoader::getSize()", referenced from:
Loader::load(std::basic_string<char, std::char_traits<char>,
std::allocator<char> >, bool)in TheRayGenomeAssembler.a(Loader.o)
"FastqGzLoader::open(std::basic_string<char, std::char_traits<char>,
std::allocator<char> >, int)", referenced from:
Loader::load(std::basic_string<char, std::char_traits<char>,
std::allocator<char> >, bool)in TheRayGenomeAssembler.a(Loader.o)
Loader::load(std::basic_string<char, std::char_traits<char>,
std::allocator<char> >, bool)in TheRayGenomeAssembler.a(Loader.o)
"FastqGzLoader::load(int, ArrayOfReads*, MyAllocator*, int)", referenced from:
Loader::loadSequences() in TheRayGenomeAssembler.a(Loader.o)
ld: symbol(s) not found
collect2: ld returned 1 exit status
make: *** [Ray] Error 1
When I run make with HAVE_LIBZ=n, compilation runs without a hitch. I had no
problems compiling 2.0.0-rc5 with libz. Just to make sure, I updated zlib with
MacPorts to 1.2.7 (universal), but still no dice. Any suggestions?
Thanks,
- Egon
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