Github user mikewalch commented on a diff in the pull request:

    https://github.com/apache/accumulo/pull/223#discussion_r103733316
  
    --- Diff: assemble/conf/templates/accumulo-env.sh ---
    @@ -53,20 +58,37 @@ shell)   JAVA_OPTS=("${JAVA_OPTS[@]}" 
${shellHigh_shellLow}) ;;
     *)       JAVA_OPTS=("${JAVA_OPTS[@]}" ${otherHigh_otherLow}) ;;
     esac
     
    -## JVM options set for logging.  Review logj4 properties files to see how 
they are used.
    -JAVA_OPTS=("${JAVA_OPTS[@]}" 
    +## JVM options set for logging. Review logj4 properties files to see how 
they are used.
    +JAVA_OPTS=("${JAVA_OPTS[@]}"
       "-Daccumulo.log.dir=${ACCUMULO_LOG_DIR}"
    -  
"-Daccumulo.service.id=${ACCUMULO_CMD}${ACCUMULO_SERVICE_INSTANCE}_$(hostname)"
    -  "-Daccumulo.audit.log=$(hostname).audit")
    +  
"-Daccumulo.application=${ACCUMULO_CMD}${ACCUMULO_SERVICE_INSTANCE}_$(hostname)")
     
     case "$ACCUMULO_CMD" in
    -monitor)                    JAVA_OPTS=("${JAVA_OPTS[@]}" 
"-Dlog4j.configuration=file:${ACCUMULO_CONF_DIR}/log4j-monitor.properties") ;;
    -gc|master|tserver|tracer)   JAVA_OPTS=("${JAVA_OPTS[@]}" 
"-Dlog4j.configuration=file:${ACCUMULO_CONF_DIR}/log4j-service.properties") ;;
    -*)                          JAVA_OPTS=("${JAVA_OPTS[@]}" 
"-Dlog4j.configuration=file:${ACCUMULO_CONF_DIR}/log4j.properties") ;;
    +  monitor)
    +    JAVA_OPTS=("${JAVA_OPTS[@]}" 
"-Dlog4j.configuration=log4j-monitor.properties")
    +    ;;
    +  gc|master|tserver|tracer)
    +    JAVA_OPTS=("${JAVA_OPTS[@]}" 
"-Dlog4j.configuration=log4j-service.properties")
    +    ;;
    +  *)
    +    # let log4j use its default behavior (log4j.xml, log4j.properties)
    +    true
    +    ;;
     esac
     
     export JAVA_OPTS
     
    +## External class path items for Java system class loader (dependencies 
not included with Accumulo)
    +CLASSPATH="$(find "$ZOOKEEPER_HOME"/{,lib} 
"$HADOOP_PREFIX"/share/hadoop/{common,common/lib,hdfs,mapreduce,yarn} -maxdepth 
1 -name '*.jar' \
    +  -and -not -name '*slf4j*' \
    +  -and -not -name '*fatjar*' \
    +  -and -not -name '*-javadoc*' \
    +  -and -not -name '*-sources*.jar' \
    +  -and -not -name '*-test*.jar' \
    +  -print0 | tr '\0' ':')$CLASSPATH"
    --- End diff --
    
    He's doing this because log4j tries to initialize his new appender and will 
throw a ClassNotFoundException as the Hadoop & Zookeeper jars set by 
`general.classpaths` are loaded later in Java by the Accumulo classloader.  
While `general.classpaths` should available to users, it should be empty by 
default and the classpath required for Accumulo should be built in 
`accumulo-env.sh` before `java` command is called.


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