Github user omefire commented on the pull request: https://github.com/apache/cordova-lib/pull/166#issuecomment-75640710 when --save/autosave is on, we should be overriding what's in config.xml, like we do on the platform side : https://github.com/apache/cordova-lib/blob/master/cordova-lib/src/cordova/platform.js#L161
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