Hello Pei, Are you able to use trunk now? Thank you, Harpreet
On Wed, Jun 18, 2014 at 12:47 PM, Harpreet Khanduja <hsk5...@g.rit.edu> wrote: > Hello Pei, > > Thank you so much for helping. > > > Harpreet > > > On Wed, Jun 18, 2014 at 11:08 AM, Pei Chen <chen...@apache.org> wrote: > >> Harpreet, >> I just did a fresh checkout of trunk and could recreate the error. I >> think >> I see the issue- the orangebook hsqldb resource is empty on maven central. >> I'm hoping to fix that up today. >> >> --Pei >> >> >> On Tue, Jun 17, 2014 at 6:22 PM, Harpreet Khanduja <hsk5...@rit.edu> >> wrote: >> >> > Hello Pei, >> > >> > I also ran from cmd line same exception >> > and I checked pom.xml file on this location. >> > https://svn.apache.org/repos/asf/ctakes/trunk >> > The version mentioned in the file is 3.1.1. >> > . >> > >> > Could you please tell me about the resources directory problem which I >> > mentioned in the last email? >> > >> > Thank you so much for your time. >> > >> > Harpreet >> > >> > >> > >> > >> > On Tue, Jun 17, 2014 at 5:45 PM, Chen, Pei < >> pei.c...@childrens.harvard.edu >> > > >> > wrote: >> > >> > > If this is trunk, Can you do an 'svn update' to ensure you have the >> > latest? >> > > If this is trunk you won't need to do a separate download- maven >> should >> > > download and unpack it automatically for you. >> > > Also try the command line alternative: >> > > 'mvn -PrunCVD compile' from the root dir. Let me know. >> > > >> > > >> > > Sent from my iPhone >> > > >> > > > On Jun 17, 2014, at 5:37 PM, "Harpreet Khanduja" <hsk5...@rit.edu> >> > > wrote: >> > > > >> > > > Pei, >> > > > >> > > > Thank you for the quick reply. >> > > > I am using CVD GUI within eclipse which is under >> > > >> ctakes-clinical-pipeline project.. >> > > >> resources >> > > >> launch >> > > > UIMA_CVD---clinical_documents_pipeline.launch. >> > > > >> > > > I am using ctakes 3.1.1 and resouces also 3.1 >> > > > >> > > > I used this link for svn : >> > https://svn.apache.org/repos/asf/ctakes/trunk >> > > > when I downloaded ctakes using Eclipse. >> > > > >> > > > isn't this svn for ctakes 3.1.1? >> > > > >> > > > Thank you, >> > > > >> > > > Harpreet >> > > > >> > > > >> > > >> On Tue, Jun 17, 2014 at 5:29 PM, Pei Chen <chen...@apache.org> >> wrote: >> > > >> >> > > >> Harpreet, >> > > >> Are you using the CVD GUI? or within Eclipse IDE? >> > > >> Also which version cTAKES are you using? trunk? >> > > >> --Pei >> > > >> >> > > >> >> > > >> On Tue, Jun 17, 2014 at 5:13 PM, Harpreet Khanduja < >> hsk5...@rit.edu> >> > > >> wrote: >> > > >> >> > > >>> Hello Pei, >> > > >>> I would really appreciate if you could help me again. >> > > >>> After talking to you and reading other email archives. I have >> done >> > > >> almost >> > > >>> everything I could, but I am not able to use >> > > >>> AggregatePlainTextUMLSProcessor.xml using >> > > >>> UIMA_CVD----clinical-pipeline.launch. >> > > >>> >> > > >>> Just to be sure. >> > > >>> The resources folder that from < >> > > >> >> > > >> > >> http://sourceforge.net/projects/ctakesresources/files/ctakes-resources-3.1.0.zip/download >> > > >>> url >> > > >>> is used to replace the resources folder which is already inside >> > > >>> ctakes/ctakes-dictionary-lookup/ -- directory or >> > > >>> ctakes/ctakes-dictionary-lookup-res/source/main/ -- >> > directory. >> > > >>> >> > > >>> And then which directory is used as a classpath to >> > > >>> ctakes-clinical-pipeline project. >> > > >>> >> > > >>> I still get the same exception that I was getting earlier. I >> looked >> > > into >> > > >>> the exception deeply and I found that the exception is thrown >> > > >>> while creating a connection object ( iv_conn ) in >> > > >>> JdbcConnectionResourceImpl.java ( line 109 or 110 ) which is >> inside >> > > >>> ctakes- core/ >> > > >>>> src/main/java >> > > >>>> org.apache.ctakes.core.resource >> > > >>> package. >> > > >>> >> > > >>> Thank you very much. >> > > >>> Harpreet >> > > >>> >> > > >>> >> > > >>> On Wed, Jun 11, 2014 at 4:33 PM, Chen, Pei < >> > > >> pei.c...@childrens.harvard.edu >> > > >>> wrote: >> > > >>> >> > > >>>> Harpreet, >> > > >>>> Just curious- is maven able to connect to the internet (maven >> > central >> > > >>>> repositories)? i.e. did you have to set your ~/.m2/settings.xml >> with >> > > >>> proxy >> > > >>>> info if behind a firewall? >> > > >>>> If it was an intermittent issue, you can try clearing out the >> local >> > > >>>> ~/.m2/repository? >> > > >>>> --Pei >> > > >>>> >> > > >>>>> -----Original Message----- >> > > >>>>> From: Harpreet Khanduja [mailto:hsk5...@rit.edu] >> > > >>>>> Sent: Wednesday, June 11, 2014 3:54 PM >> > > >>>>> To: dev@ctakes.apache.org >> > > >>>>> Subject: Re: query >> > > >>>>> >> > > >>>>> Pei, >> > > >>>>> I had provided the classpath = >> ctakes-dictionay-look-up/resources >> > > >> to >> > > >>>> all the >> > > >>>>> projects in ctakes. >> > > >>>>> as it says in the documentation but there was nothing inside >> my >> > > >>> target >> > > >>>>> folder in ctakes-clinical-pipeline directory. >> > > >>>>> So, then I ran maven compile and I got following error. >> > > >>>>> >> > > >>>>> >> > > >>>>> [ERROR] Failed to execute goal on project >> ctakes-clinical-pipeline: >> > > >>>> Could not >> > > >>>>> resolve dependencies for project >> > > >>>>> org.apache.ctakes:ctakes-clinical-pipeline:jar:3.1.2-SNAPSHOT: >> > Failed >> > > >>> to >> > > >>>>> collect dependencies for >> > > >>> [org.apache.ctakes:ctakes-type-system:jar:3.1.2- >> > > >>>>> SNAPSHOT (compile), >> > org.apache.ctakes:ctakes-core:jar:3.1.2-SNAPSHOT >> > > >>>>> (compile), org.apache.ctakes:ctakes-utils:jar:3.1.2-SNAPSHOT >> > > >> (compile), >> > > >>>>> jdom:jdom:jar:1.0 (compile), junit:junit:jar:4.10 (test), >> > > >>>>> org.apache.ctakes:ctakes-context-tokenizer:jar:3.1.2-SNAPSHOT >> > > >>> (compile), >> > > >>>>> org.apache.ctakes:ctakes-dictionary-lookup:jar:3.1.2-SNAPSHOT >> > > >>> (compile), >> > > >>>>> org.apache.ctakes:ctakes-preprocessor:jar:3.1.2-SNAPSHOT >> (compile), >> > > >>>>> org.apache.ctakes:ctakes-lvg:jar:3.1.2-SNAPSHOT (compile), >> > > >>>>> org.apache.ctakes:ctakes-chunker:jar:3.1.2-SNAPSHOT (compile), >> > > >>>>> org.apache.ctakes:ctakes-ne-contexts:jar:3.1.2-SNAPSHOT >> (compile), >> > > >>>>> org.apache.ctakes:ctakes-pos-tagger:jar:3.1.2-SNAPSHOT >> (compile), >> > > >>>>> org.apache.ctakes:ctakes-assertion:jar:3.1.2-SNAPSHOT (compile), >> > > >>>>> org.apache.ctakes:ctakes-dependency-parser:jar:3.1.2-SNAPSHOT >> > > >>> (compile), >> > > >>>>> >> org.apache.ctakes:ctakes-dependency-parser-res:jar:3.1.2-SNAPSHOT >> > > >>>>> (compile), org.apache.ctakes:ctakes-ytex:jar:3.1.2-SNAPSHOT >> > > >> (compile), >> > > >>>>> org.apache.ctakes:ctakes-ytex-res:jar:3.1.2-SNAPSHOT (compile), >> > > >>>>> org.apache.ctakes:ctakes-ytex-uima:jar:3.1.2-SNAPSHOT >> (compile)]: >> > > >>> Failed >> > > >>>>> to read artifact descriptor for >> > > >>>>> org.apache.ctakes:ctakes-type-system:jar:3.1.2-SNAPSHOT: >> Failure to >> > > >>> find >> > > >>>>> org.apache.ctakes:ctakes:pom:3.1.2-SNAPSHOT in >> > > >>>>> http://repository.apache.org/snapshots was cached in the local >> > > >>>> repository, >> > > >>>>> resolution will not be reattempted until the update interval of >> > > >>>>> apache.snapshots has elapsed or updates are forced -> [Help 1] >> > > >> [ERROR] >> > > >>>>> >> > > >>>>> >> > > >>>>> >> > > >>>>> On Wed, Jun 11, 2014 at 2:17 PM, Chen, Pei >> > > >>>>> <pei.c...@childrens.harvard.edu> >> > > >>>>> wrote: >> > > >>>>> >> > > >>>>>> Harpreet, >> > > >>>>>> I had a closer look at your log file and it looks like you were >> > > >>>>>> actually trying to run it from Eclipse IDE? >> > > >>>>>> If so, just ensure that the resources do exist in the >> classpath. >> > > >>>>>> If it's within eclipse ide, the plugin should download and >> unpack >> > > >> the >> > > >>>>>> umls dictionaries automatically actually. (you can check the >> below >> > > >> to >> > > >>>>>> ensure it exists >> > > >>>>>> target/classes/org/apache/ctakes/dictionary/lookup/umls2011ab/) >> > > >>>>>> You can also try running 'mvn clean compile' from the command >> line >> > > >> as >> > > >>>>> well. >> > > >>>>>> >> > > >>>>>> >> > > >>>>>> >> > > >>>>>>> -----Original Message----- >> > > >>>>>>> From: Harpreet Khanduja [mailto:hsk5...@rit.edu] >> > > >>>>>>> Sent: Wednesday, June 11, 2014 2:09 PM >> > > >>>>>>> To: dev@ctakes.apache.org >> > > >>>>>>> Subject: Re: query >> > > >>>>>>> >> > > >>>>>>> Hello, >> > > >>>>>>> Thanks for the reply, but I have already done that and I >> made >> > > >>>>>>> sure >> > > >>>>>> that >> > > >>>>>>> these resources are there all over again. >> > > >>>>>>> >> > > >>>>>>> Harpreet >> > > >>>>>>> >> > > >>>>>>> >> > > >>>>>>> >> > > >>>>>>> On Wed, Jun 11, 2014 at 1:49 PM, Pei Chen <chen...@apache.org >> > >> > > >>>>> wrote: >> > > >>>>>>> >> > > >>>>>>>> Harpreet, >> > > >>>>>>>> Ensure that you have downloaded the dictionaries (umls) per >> > > >>>>>>>> download >> > > >>>>>>> page: >> > > >>>>>>>> http://ctakes.apache.org/downloads.cgi >> > > >>>>>>>> Resources >> > > >>>>>>>> >> > > >>>>>>>> Resources are required to run most of cTAKES. They are >> > > >> available >> > > >>>>>>>> for download from SourceForge: ctakes-resources-3.1.0.zip < >> > > >>> >> http://sourceforge.net/projects/ctakesresources/files/ctakes-resou >> > > >>>>>>>> rces >> > > >>>>>>>> -3.1.0.zip/download >> > > >>>>>>>> . >> > > >>>>>>>> >> > > >>>>>>>> Please download, unzip and add/merge the contents to the >> > > >> existing >> > > >>>>>>>> resources directory. Follow the User >> > > >>>>>>>> <https://cwiki.apache.org/confluence/x/oxAHAg> >> > > >>>>>>>> or Developer <https://cwiki.apache.org/confluence/x/nxAHAg> >> > > >>>>>>>> Install Guide to direct you through the installation process. >> > > >>>>>>>> >> > > >>>>>>>> >> > > >>>>>>>> On Wed, Jun 11, 2014 at 1:45 PM, Harpreet Khanduja >> > > >>>>>>>> <hsk5...@rit.edu> >> > > >>>>>>>> wrote: >> > > >>>>>>>> >> > > >>>>>>>>> Hello, >> > > >>>>>>>>> I am trying to use ctakes as a developer. I am not able to >> > > >>> use >> > > >>>>>>>>> UMLS resources when I run >> > > >>>>>>>>> the AEs which use UMLS Dictionary. >> > > >>>>>>>>> I have signed up on the UMLS website and I am using the >> > > >>>>>>>>> correct email >> > > >>>>>>>> and >> > > >>>>>>>>> password. >> > > >>>>>>>>> I have specified username and password in >> > > >>>>>>>>> >> > > >>>>>>>>> Dictionary Lookup: <cTAKES_HOME>/desc/ctakes-dictionary- >> > > >>>>> lookup/desc/analysis_engine/DictionaryLookupAnnotatorUMLS.xml* >> > > >>>>>>>>> >> > > >>>>>>>>> >> > > >>>>>>>>> But I keep getting the exception. I would really appreciate >> > > >>>>>>>>> any help on this. >> > > >>>>>>>>> >> > > >>>>>>>>> OUTPUT THAT I GET on running >> > > >>>>> AggregatePlaintextUMLSProcessor.xml : >> > > >>>>>>>>> >> > > >>>>>>>>> >> > > >>>>>>>>> log4j: reset attribute= "false". >> > > >>>>>>>>> log4j: Threshold ="null". >> > > >>>>>>>>> log4j: Level value for root is [INFO]. >> > > >>>>>>>>> log4j: root level set to INFO >> > > >>>>>>>>> log4j: Class name: [org.apache.log4j.ConsoleAppender] >> > > >>>>>>>>> log4j: Parsing layout of class: >> > > >>> "org.apache.log4j.PatternLayout" >> > > >>>>>>>>> log4j: Setting property [conversionPattern] to [%d{dd MMM >> > > >> yyyy >> > > >>>>>>>>> HH:mm:ss} %5p %c{1} - %m%n]. >> > > >>>>>>>>> log4j: Adding appender named [consoleAppender] to category >> > > >>>> [root]. >> > > >>>>>>>>> 11 Jun 2014 13:07:01 INFO TokenizerAnnotatorPTB - >> > > >> Initializing >> > > >>>>>>>>> org.apache.ctakes.core.ae.TokenizerAnnotatorPTB >> > > >>>>>>>>> 11 Jun 2014 13:07:01 INFO POSTagger - POS tagger model >> file: >> > > >>>>>>>>> org/apache/ctakes/postagger/models/mayo-pos.zip >> > > >>>>>>>>> 11 Jun 2014 13:07:01 INFO >> > > >> ContextDependentTokenizerAnnotator - >> > > >>>>>>>>> Finite state machines loaded. >> > > >>>>>>>>> 11 Jun 2014 13:07:01 INFO Chunker - Chunker model file: >> > > >>>>>>>>> org/apache/ctakes/chunker/models/chunker-model.zip >> > > >>>>>>>>> 11 Jun 2014 13:07:03 INFO SentenceDetector - Sentence >> > > >> detector >> > > >>>>>>>>> model >> > > >>>>>>>> file: >> > > >>>>>>>>> org/apache/ctakes/core/sentdetect/sd-med-model.zip >> > > >>>>>>>>> 11 Jun 2014 13:07:03 INFO LvgCmdApiResourceImpl - Loading >> > > >> NLM >> > > >>>>>>>>> Norm and >> > > >>>>>>>> Lvg >> > > >>>>>>>>> with config file = >> > > >>>>>>>> D:\workspaces\workspace_cTakes\ctakes\ctakes-dictionary- >> > > >>>>>>> lookup\resourc >> > > >>>>>>>> es\org\apache\ctakes\lvg\data\config\lvg.properties >> > > >>>>>>>>> 11 Jun 2014 13:07:03 INFO LvgCmdApiResourceImpl - config >> > > >>> file >> > > >>>>>> absolute >> > > >>>>>>>>> path = >> > > >>>>>>>> D:\workspaces\workspace_cTakes\ctakes\ctakes-dictionary- >> > > >>>>>>> lookup\resourc >> > > >>>>>>>> es\org\apache\ctakes\lvg\data\config\lvg.properties >> > > >>>>>>>>> 11 Jun 2014 13:07:03 INFO LvgCmdApiResourceImpl - cwd = >> > > >> D:\workspaces\workspace_cTakes\ctakes\ctakes-clinical-pipeline >> > > >>>>>>>>> 11 Jun 2014 13:07:03 INFO LvgCmdApiResourceImpl - cd >> > > >>>>>>>> D:\workspaces\workspace_cTakes\ctakes\ctakes-dictionary- >> > > >>>>>>> lookup\resourc >> > > >>>>>>>> es\org\apache\ctakes\lvg\ >> > > >>>>>>>>> 11 Jun 2014 13:07:03 INFO LvgCmdApiResourceImpl - cd >> > > >> D:\workspaces\workspace_cTakes\ctakes\ctakes-clinical-pipeline >> > > >>>>>>>>> 11 Jun 2014 13:07:04 INFO JdbcConnectionResourceImpl - >> > > >>>>>>>>> Connection established to: >> > > >>> jdbc:hsqldb:res:/org/apache/ctakes/dictionary/lookup/umls2011ab/ >> > > >>>>>>>>> umls >> > > >>>>>>>>> Exception in thread "main" >> > > >>>>>>>>> org.apache.uima.resource.ResourceInitializationException >> > > >>>>>>>>> at >> > > >>> >> org.apache.ctakes.core.resource.JdbcConnectionResourceImpl.load(Jdbc >> > > >>>>>>> Co >> > > >>>>>>>> nnectionResourceImpl.java:130) >> > > >>>>>>>>> at >> > > >>>>> >> > org.apache.uima.resource.impl.ResourceManager_impl.registerResource( >> > > >>>>>>> Re >> > > >>>>>>>> sourceManager_impl.java:603) >> > > >>>>>>>>> at >> > > >>> org.apache.uima.resource.impl.ResourceManager_impl.initializeExter >> > > >>>>>>>> nalR >> > > >>>>>>>> esources(ResourceManager_impl.java:442) >> > > >>>>>>>>> at >> > > >>> org.apache.uima.resource.Resource_ImplBase.initialize(Resource_Imp >> > > >>>>>>>> lBas >> > > >>>>>>>> e.java:153) >> > > >>>>>>>>> at >> > > >>> org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.initia >> > > >>>>>>>> lize >> > > >>>>>>>> (AnalysisEngineImplBase.java:157) >> > > >>>>>>>>> at >> > > >>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl. >> > > >>>>>>>> init >> > > >>>>>>>> ialize(PrimitiveAnalysisEngine_impl.java:123) >> > > >>>>>>>>> at >> > > >>>>> >> > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Anal >> > > >>>>>>> ys >> > > >>>>>>>> isEngineFactory_impl.java:94) >> > > >>>>>>>>> at >> > > >>>>> >> > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(C >> > > >>>>>>> om >> > > >>>>>>>> positeResourceFactory_impl.java:62) >> > > >>>>>>>>> at >> > > >>>>> >> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java: >> > > >>>>>>> 269 >> > > >>>>>>>>> ) >> > > >>>>>>>>> at >> > > >>>>> >> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework >> > > >>>>>>> .java >> > > >>>>>>>> :387) >> > > >>>>>>>>> at >> > > >> >> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java: >> > > >>>>>>>> 254) >> > > >>>>>>>>> at >> > > >>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl. >> > > >>>>>>>> init >> > > >>>>>>>> ASB(AggregateAnalysisEngine_impl.java:431) >> > > >>>>>>>>> at >> > > >>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl. >> > > >>>>>>>> init >> > > >>> ializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:37 >> > > >>>>>>>> 5) >> > > >>>>>>>>> at >> > > >>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl. >> > > >>>>>>>> init >> > > >>>>>>>> ialize(AggregateAnalysisEngine_impl.java:185) >> > > >>>>>>>>> at >> > > >>>>> >> > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Anal >> > > >>>>>>> ys >> > > >>>>>>>> isEngineFactory_impl.java:94) >> > > >>>>>>>>> at >> > > >>>>> >> > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(C >> > > >>>>>>> om >> > > >>>>>>>> positeResourceFactory_impl.java:62) >> > > >>>>>>>>> at >> > > >>>>> >> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java: >> > > >>>>>>> 269 >> > > >>>>>>>>> ) >> > > >>>>>>>>> at >> > > >>>>> >> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework >> > > >>>>>>> .java >> > > >>>>>>>> :387) >> > > >>>>>>>>> at >> > > >> >> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java: >> > > >>>>>>>> 254) >> > > >>>>>>>>> at >> > > >>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl. >> > > >>>>>>>> init >> > > >>>>>>>> ASB(AggregateAnalysisEngine_impl.java:431) >> > > >>>>>>>>> at >> > > >>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl. >> > > >>>>>>>> init >> > > >>> ializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:37 >> > > >>>>>>>> 5) >> > > >>>>>>>>> at >> > > >>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl. >> > > >>>>>>>> init >> > > >>>>>>>> ialize(AggregateAnalysisEngine_impl.java:185) >> > > >>>>>>>>> at >> > > >>>>> >> > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(Anal >> > > >>>>>>> ys >> > > >>>>>>>> isEngineFactory_impl.java:94) >> > > >>>>>>>>> at >> > > >>>>> >> > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(C >> > > >>>>>>> om >> > > >>>>>>>> positeResourceFactory_impl.java:62) >> > > >>>>>>>>> at >> > > >>>>> >> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java: >> > > >>>>>>> 269 >> > > >>>>>>>>> ) at >> > > >>>>> >> org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java: >> > > >>>>>>> 314 >> > > >>>>>>>>> ) >> > > >>>>>>>>> at >> > > >>>>> >> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework >> > > >>>>>>> .java >> > > >>>>>>>> :425) >> > > >>>>>>>>> at >> > > >>> org.uimafit.factory.AnalysisEngineFactory.createAggregate(Analysis >> > > >>>>>>>> Engi >> > > >>>>>>>> neFactory.java:424) >> > > >>>>>>>>> at >> > > >>> org.uimafit.pipeline.SimplePipeline.runPipeline(SimplePipeline.jav >> > > >>>>>>>> a:16 >> > > >>>>>>>> 5) >> > > >>>>>>>>> at >> > > >>> org.uimafit.pipeline.SimplePipeline.runPipeline(SimplePipeline.jav >> > > >>>>>>>> a:19 >> > > >>>>>>>> 0) >> > > >>>>>>>>> at >> > > >>> org.apache.ctakes.clinicalpipeline.ClinicalPipelineFactory.main(Cl >> > > >>>>>>>> inic >> > > >>>>>>>> alPipelineFactory.java:116) >> > > >>>>>>>>> Caused by: java.sql.SQLException: File input/output error: >> > > >>>>>>>>> java.io.IOException: Stream closed at >> > > >>>>>>>>> org.hsqldb.jdbc.Util.sqlException(Unknown Source) at >> > > >>>>>>>>> org.hsqldb.jdbc.jdbcConnection.<init>(Unknown Source) at >> > > >>>>>>>>> org.hsqldb.jdbcDriver.getConnection(Unknown Source) at >> > > >>>>>>>>> org.hsqldb.jdbcDriver.connect(Unknown Source) at >> > > >>>>>>>>> java.sql.DriverManager.getConnection(Unknown Source) at >> > > >>>>>>>>> java.sql.DriverManager.getConnection(Unknown Source) at >> > > >>> >> org.apache.ctakes.core.resource.JdbcConnectionResourceImpl.load(Jdbc >> > > >>>>>>> Co >> > > >>>>>>>> nnectionResourceImpl.java:109) >> > > >>>>>>>>> ... 30 more >> > > >> >> > > >> > >> > >
