I am able to pull entity information for different section correctly. But facing issues when it comes to pull subject information. The subject is always pulled as "PATIENT".
I do have this added in the AssertionPipeline builder.add( SubjectCleartkAnalysisEngine.createAnnotatorDescription() ); Here are some sample output : Entity: 3 === Text: Blood Transfusion === Polarity: 1 === Subject: patient === EntityName: org.apache.ctakes.typesystem.type.textsem.SignSymptomMention Entity: 6 === Text: Blood === Polarity: 1 === Subject: patient === EntityName: org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention Entity: 3 === Text: Transfusion Reaction === Polarity: 1 === Subject: patient === EntityName: org.apache.ctakes.typesystem.type.textsem.SignSymptomMention Entity: 5 === Text: Transfusion === Polarity: 1 === Subject: patient === EntityName: org.apache.ctakes.typesystem.type.textsem.ProcedureMention Entity: 2 === Text: HIV === Polarity: 1 === Subject: patient === EntityName: org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention Entity: 6 === Text: Sickle Cell === Polarity: 1 === Subject: patient === EntityName: org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention Entity: 2 === Text: Neurologic Disorders === Polarity: 1 === Subject: patient === EntityName: org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention Entity: 2 === Text: Autoimmune Disorders === Polarity: 1 === Subject: patient === EntityName: org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention Entity: 3 === Text: Autoimmune === Polarity: 1 === Subject: patient === EntityName: org.apache.ctakes.typesystem.type.textsem.SignSymptomMention Entity: 2 === Text: Autoimmune Disorders === Polarity: -1 === Subject: patient === EntityName: org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention Entity: 3 === Text: Autoimmune === Polarity: 1 === Subject: patient === EntityName: org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
