What output would you like? What are you expecting? This field in theory could have a few different values: patient, family_member, other, donor(iirc?)
But in reality our training data was very skewed towards the patient label, and the representation we used for training is not great at picking up section-wide cues that would be helpful (like a family history section header). So in practice it almost always will say "patient." It may occasionally get something very obvious: "Mother had breast cancer" I don't know if it will get this exact example, it probably needs to look exactly like a training instance because we had very few to generalize from. Thanks Tim On Wed, 2018-01-17 at 00:57 +0530, Ratan Sharma wrote: > I am able to pull entity information for different section correctly. > But > facing issues when it comes to pull subject information. The subject > is > always pulled as "PATIENT". > > I do have this added in the AssertionPipeline > builder.add( > SubjectCleartkAnalysisEngine.createAnnotatorDescription() ); > > > Here are some sample output : > > Entity: 3 === Text: Blood Transfusion === Polarity: 1 === Subject: > patient > === EntityName: > org.apache.ctakes.typesystem.type.textsem.SignSymptomMention > Entity: 6 === Text: Blood === Polarity: 1 === Subject: patient === > EntityName: > org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention > Entity: 3 === Text: Transfusion Reaction === Polarity: 1 === Subject: > patient === EntityName: > org.apache.ctakes.typesystem.type.textsem.SignSymptomMention > Entity: 5 === Text: Transfusion === Polarity: 1 === Subject: patient > === > EntityName: > org.apache.ctakes.typesystem.type.textsem.ProcedureMention > Entity: 2 === Text: HIV === Polarity: 1 === Subject: patient === > EntityName: > org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention > Entity: 6 === Text: Sickle Cell === Polarity: 1 === Subject: patient > === > EntityName: > org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention > Entity: 2 === Text: Neurologic Disorders === Polarity: 1 === Subject: > patient === EntityName: > org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention > Entity: 2 === Text: Autoimmune Disorders === Polarity: 1 === Subject: > patient === EntityName: > org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention > Entity: 3 === Text: Autoimmune === Polarity: 1 === Subject: patient > === > EntityName: > org.apache.ctakes.typesystem.type.textsem.SignSymptomMention > Entity: 2 === Text: Autoimmune Disorders === Polarity: -1 === > Subject: > patient === EntityName: > org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention > Entity: 3 === Text: Autoimmune === Polarity: 1 === Subject: patient > === > EntityName: > org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
