Hi Matthew, I have looked into the ctakes docker. I have followed the instructions on the readme file and I am running it on my machine by skipping de-identification and run the CVD point to the desc/nodeidPipeline.xml. It is giving me the following error
Unexpected error while initializing "org.apache.uima.aae.jms_adapter.JmsAnalysisEngineServiceAdapter" from descriptor file:/Users/zakirsaifi/ctakes-docker/desc/docker-mist.xml . docker-mist.xml file <?xml version="1.0" encoding="UTF-8" ?> <customResourceSpecifier xmlns="http://uima.apache.org/resourceSpecifier";> <resourceClassName>org.apache.uima.aae.jms_adapter.JmsAnalysisEngineServiceAdapter</resourceClassName> <parameters> <parameter name="brokerURL" value="tcp://localhost:61616"/> <parameter name="endpoint" value="mistQueue"/> <parameter name="binary_serialization" value="false"/> <parameter name="ignore_process_errors" value="false"/> </parameters> </customResourceSpecifier> On Tue, May 22, 2018 at 10:20 AM, Zakir Saifi <[email protected]> wrote: > Thanks, Matthew and Gandhi. I look into the docker solution. > > On Mon, May 21, 2018 at 9:59 PM, Matthew Vita <[email protected]> > wrote: > >> Hi all, >> >> It's not using the REST service, but this docker solution allows for >> distributed queuing: https://github.com/tmills/ctakes-docker >> >> This may help with your large text volumes. >> >> >> On Mon, May 21, 2018, 9:02 AM Gandhi Rajan Natarajan < >> [email protected]> wrote: >> >> > Even if you send it in batch, the processing will be sequential I guess. >> > You may have to run multiple instances of REST service to process huge >> > volume of records. >> > >> > Regards, >> > Gandhi >> > >> > -----Original Message----- >> > From: Zakir Saifi [mailto:[email protected]] >> > Sent: Monday, May 21, 2018 4:23 PM >> > To: [email protected] >> > Subject: Batching Queries in Ctakes Web Rest >> > >> > I am using ctakesRestService to process unstructured clinical text. I >> have >> > a long list of records which I want to be structured. On average Ctakes >> > service for me is taking 3.6 seconds to process a record. I want to >> *batch >> > this process* in order to reduce time. Is there any way in which I can >> sent >> > number of queries to the ctakes web rest service in batch and get the >> > appropriate result from it. My Ctakes version is 4.0.1. I have also >> changed >> > the default piper file and added other annotators for extracting more >> > information like BackwardsTimeAnnotator, DocTimeRelAnnotator etc. >> > >> > This email and any files transmitted with it are confidential and >> intended >> > solely for the use of the individual or entity to whom they are >> addressed. >> > If you are not the named addressee you should not disseminate, >> distribute >> > or copy this e-mail. Please notify the sender or system manager by email >> > immediately if you have received this e-mail by mistake and delete this >> > e-mail from your system. If you are not the intended recipient you are >> > notified that disclosing, copying, distributing or taking any action in >> > reliance on the contents of this information is strictly prohibited and >> > against the law. >> > >> > >
