I want to use cTAKES offline I am using command line
run\runClinicalPipeline -i E:\cTAKES\files\MedReps\Input --xmiOut E:\cTAKES\files\MedReps\Output --user myuser --pass mypassword This is my piper file load DefaultTokenizerPipeline.piper add DefaultJCasTermAnnotator load AttributeCleartkSubPipe.piper writeXmis I thought UMLS will be accessed once and download all needed files so the next time it does not need the internet to access **UMLS** but I was wrong. When I work offline cTAKES does not work in attempt to access UMLS and gives error. I found that UMLS offers to download its data, so I did I downloaded **umls-2020AA-full.zip** I extracted Metathesaurus using MetamorphoSys and added it to E:\cTAKES\resources\org\apache\ctakes\dictionary\lookup\umls2020aa It is a huge folder 30GB+ full of .RRF files but did not work Not sure where the problem is do I have to change pipers? do I have to change the command? do I have to change files in the folder umls2020aa? How to fix these problems to use cTAKES offline?
