>if I make any changes I can simply rename the file and run it again
I haven't tried that and it is an interesting idea.
I think that you can run multiple times as long as there aren't any annotators
that try to persist something immutable through a complete run and throw
exceptions if the next run tries to reset the information.
In reality, I just need to remember to fix the code ...
Sean
________________________________________
From: Monogyiou, Eugenia <eugenia.monogy...@nttdata.com>
Sent: Wednesday, November 25, 2020 9:39 AM
To: dev@ctakes.apache.org
Subject: RE: Piper Submitter GUI missing? [EXTERNAL] [SUSPICIOUS]
* External Email - Caution *
So many thanks for a prompt response Sean - I have used previous responses of
yours to other requests and it always helped when I was changing source code!
(Examples is the only place I never checked and the obvious one -why is it
called examples , Eugenia ?).
Also can I please ask - I thought I saw somewhere that I can only run a piper
file once this way unlike user version- so if I make any changes I can simply
rename the file and run it again same way correct?
Thank you!
Kind Regards,
Eugenia Monogyiou | NTT Data UK
Consulting & IT Solutions Ltd. 1 Royal Exchange, London EC3V 3DG
Mob: +44 (0)7971623683 Email: eugenia.monogy...@nttdata.com
-----Original Message-----
From: Finan, Sean <sean.fi...@childrens.harvard.edu>
Sent: 25 November 2020 14:33
To: dev@ctakes.apache.org
Subject: Re: Piper Submitter GUI missing? [EXTERNAL] [SUSPICIOUS]
Oh -- ctakes-clinical-pipeline does not have ctakes-gui as a dependency. So if
you want to put the profile in that pom then you will also need to add
ctakes-gui as a dependency in that pom.
________________________________________
From: Finan, Sean <sean.fi...@childrens.harvard.edu>
Sent: Wednesday, November 25, 2020 9:30 AM
To: dev@ctakes.apache.org
Subject: Re: Piper Submitter GUI missing? [EXTERNAL] [SUSPICIOUS]
* External Email - Caution *
Hi Eugenia,
I am glad that you are a fan!
The trunk version has a profile to start the piper file submitter gui defined
in the ctakes-examples pom.
However, the 4.0 release does not have a profile to do so.
If you want to use a pfs gui profile in 4.0 then you will need to edit a
downstream (like ctakes-clinical-pipeline) pom.xml and add the following
(snippet from ctakes-examples 4.0.1-SNAPSHOT pom.xml) in <profiles>:
<profile>
<id>runPiperGui</id>
<activation>
<property>
<name>runPiperGui</name>
</property>
</activation>
<build>
<plugins>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>exec-maven-plugin</artifactId>
<executions>
<execution>
<goals>
<goal>exec</goal>
</goals>
</execution>
</executions>
<configuration>
<executable>java</executable>
<includeProjectDependencies>true</includeProjectDependencies>
<includePluginDependencies>true</includePluginDependencies>
<workingDirectory>${project.parent.basedir}</workingDirectory>
<arguments>
<argument>-classpath</argument>
<classpath/>
<argument>-Xmx3G</argument>
<argument>org.apache.ctakes.gui.pipeline.PiperRunnerGui</argument>
</arguments>
</configuration>
</plugin>
</plugins>
</build>
</profile>
Sean
________________________________________
From: Monogyiou, Eugenia <eugenia.monogy...@nttdata.com>
Sent: Wednesday, November 25, 2020 8:49 AM
To: dev@ctakes.apache.org
Subject: Piper Submitter GUI missing? [EXTERNAL]
* External Email - Caution *
Hello,
cTakes newbie and big fan so far!
I have installed and been using the user version (4.0.0) and the source code as
per the developer install guide and have tried a few pipelines. I wanted to use
the piper file submitter gui exposed by the developer version but I cannot
locate an active profile in Maven for that. I checked the pom.xml (parent ,
ctakes-gui , ctakes-core etc.) but no profiles listed there either. I can
locate the corresponding class in ctakes-gui but no launch folder etc. I could
not locate specific instructions in the standard documentation either ... I am
using Eclipse 4.16 , maven plugin (also installed Apache Maven separately and
run command line from there) and it seems I have the latest trunk version so I
am out of ideas at this point and very close to a deadline so any feedback,
help comments will be greatly appreciated!
Many thanks in advance,
Kind Regards,
Eugenia
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