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https://issues.apache.org/jira/browse/JENA-624?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=14998275#comment-14998275
]
ASF GitHub Bot commented on JENA-624:
-------------------------------------
Github user afs commented on a diff in the pull request:
https://github.com/apache/jena/pull/94#discussion_r44382482
--- Diff:
jena-arq/src/main/java/org/apache/jena/sparql/core/mem/DatasetGraphInMemory.java
---
@@ -0,0 +1,310 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+package org.apache.jena.sparql.core.mem;
+
+import static java.lang.ThreadLocal.withInitial;
+import static org.apache.jena.graph.Node.ANY;
+import static org.apache.jena.query.ReadWrite.READ;
+import static org.apache.jena.query.ReadWrite.WRITE;
+import static org.apache.jena.sparql.core.Quad.isUnionGraph;
+
+import java.util.HashSet;
+import java.util.Iterator;
+import java.util.Set;
+import java.util.concurrent.locks.ReentrantReadWriteLock;
+import java.util.function.Consumer;
+import java.util.function.Supplier;
+
+import org.apache.jena.graph.Graph;
+import org.apache.jena.graph.Node;
+import org.apache.jena.graph.Triple;
+import org.apache.jena.query.ReadWrite;
+import org.apache.jena.shared.Lock;
+import org.apache.jena.shared.LockMRPlusSW;
+import org.apache.jena.sparql.JenaTransactionException;
+import org.apache.jena.sparql.core.DatasetGraph;
+import org.apache.jena.sparql.core.DatasetGraphTriplesQuads;
+import org.apache.jena.sparql.core.DatasetPrefixStorage;
+import org.apache.jena.sparql.core.Quad;
+import org.apache.jena.sparql.core.Transactional;
+
+/**
+ * A {@link DatasetGraph} backed by an {@link QuadTable}. By default, this
is a {@link HexTable} designed for high-speed
+ * in-memory operation.
+ *
+ */
+public class DatasetGraphInMemory extends DatasetGraphTriplesQuads
implements Transactional {
+
+ private final DatasetPrefixStorage prefixes = new
DatasetPrefixStorageInMemory();
+
+ private final Lock writeLock = new LockMRPlusSW();
+
+ private Lock writeLock() {
+ return writeLock;
+ }
+
+ private final ReentrantReadWriteLock commitLock = new
ReentrantReadWriteLock(true);
+
+ /**
+ * Commits must be atomic, and because a thread that is committing
alters the various indexes one after another, we
+ * lock out {@link #begin(ReadWrite)} while {@link #commit()} is
executing.
+ */
+ private ReentrantReadWriteLock commitLock() {
+ return commitLock;
+ }
+
+ private final ThreadLocal<Boolean> isInTransaction = withInitial(() ->
false);
+
+ @Override
+ public boolean isInTransaction() {
+ return isInTransaction.get();
+ }
+
+ protected void isInTransaction(final boolean b) {
+ isInTransaction.set(b);
+ }
+
+ private final ThreadLocal<ReadWrite> transactionType = withInitial(()
-> null);
+
+ /**
+ * @return the type of transaction in progress
+ */
+ public ReadWrite transactionType() {
+ return transactionType.get();
+ }
+
+ protected void transactionType(final ReadWrite readWrite) {
+ transactionType.set(readWrite);
+ }
+
+ private final QuadTable quadsIndex;
+
+ private QuadTable quadsIndex() {
+ return quadsIndex;
+ }
+
+ private final TripleTable defaultGraph;
+
+ private TripleTable defaultGraph() {
+ return defaultGraph;
+ }
+
+ @Override
+ public Lock getLock() {
+ return writeLock();
+ }
+
+ /**
+ * Default constructor.
+ */
+ public DatasetGraphInMemory() {
+ this(new HexTable(), new TriTable());
+ }
+
+ /**
+ * @param i a table in which to store quads
+ * @param t a table in which to store triples
+ */
+ public DatasetGraphInMemory(final QuadTable i, final TripleTable t) {
+ this.quadsIndex = i;
+ this.defaultGraph = t;
+ }
+
+ @Override
+ public void begin(final ReadWrite readWrite) {
+ if (isInTransaction()) throw new
JenaTransactionException("Transactions cannot be nested!");
+ transactionType(readWrite);
+ isInTransaction(true);
+ getLock().enterCriticalSection(readWrite.equals(READ)); // get
the dataset write lock, if needed.
+ commitLock().readLock().lock(); // if a commit is proceeding,
wait so that we see a coherent index state
+ try {
+ quadsIndex().begin(readWrite);
+ } finally {
+ commitLock().readLock().unlock();
+ }
+ }
+
+ @Override
+ public void commit() {
+ if (!isInTransaction()) throw new
JenaTransactionException("Tried to commit outside a transaction!");
+ commitLock().writeLock().lock();
+ try {
+ quadsIndex().commit();
+ defaultGraph().commit();
+ } finally {
+ commitLock().writeLock().unlock();
+ }
+ end();
+ }
+
+ @Override
+ public void abort() {
+ if (!isInTransaction()) throw new
JenaTransactionException("Tried to abort outside a transaction!");
+ end();
+ }
+
+ @Override
+ public void close() {
+ if (isInTransaction()) abort();
+
+ }
+
+ @Override
+ public void end() {
+ quadsIndex().end();
+ defaultGraph().end();
+ isInTransaction(false);
+ transactionType(null);
+ getLock().leaveCriticalSection();
+ }
+
+ private <T> Iterator<T> access(final Supplier<Iterator<T>> source) {
+ if (!isInTransaction()) {
+ begin(READ);
+ try {
+ return source.get();
+ } finally {
+ end();
+ }
+ }
+ return source.get();
+ }
+
+ @Override
+ public Iterator<Node> listGraphNodes() {
+ return access(() -> quadsIndex().listGraphNodes().iterator());
+ }
+
+ private Iterator<Quad> quadsFinder(final Node g, final Node s, final
Node p, final Node o) {
+ if (isUnionGraph(g)) { // union graph is the merge of named
graphs
+ final Set<Triple> seen = new HashSet<>();
+ return quadsIndex().find(ANY, s, p, o).filter(q ->
!q.isDefaultGraph() && seen.add(q.asTriple()))
+ .iterator();
+ }
--- End diff --
I don't see any tests for the union graph.
> Develop a new in-memory RDF Dataset implementation
> --------------------------------------------------
>
> Key: JENA-624
> URL: https://issues.apache.org/jira/browse/JENA-624
> Project: Apache Jena
> Issue Type: Improvement
> Reporter: Andy Seaborne
> Assignee: A. Soroka
> Labels: gsoc, gsoc2015, java, linked_data, rdf
>
> The current (Jan 2014) Jena in-memory dataset uses a general purpose
> container that works for any storage technology for graphs together with
> in-memory graphs.
> This project would develop a new implementation design specifically for RDF
> datasets (triples and quads) and efficient SPARQL execution, for example,
> using multi-core parallel operations and/or multi-version concurrent
> datastructures to maximise true parallel operation.
> This is a system project suitable for someone interested in datatbase
> implementation, datastructure design and implementation, operating systems or
> distributed systems.
> Note that TDB can operate in-memory using a simulated disk with
> copy-in/copy-out semantics for disk-level operations. It is for faithful
> testing TDB infrastructure and is not designed performance, general in-memory
> use or use at scale. While lesson may be learnt from that system, TDB
> in-memory is not the answer here.
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