Hi, I have observed following issue with ontology upload.
a. Upload becomes successful, however access is not possible b. Delete doesn't seem to work c. Exception is being thrown while uploading a new ontology I would appreciate, if someone can help out pertaining to these issues. Please find included detailed description at the end. Thanks in advance, Rajan *Steps to re-crate:* 1. Create new scope "newsEvents" from the Scope Manager 2. Upload the ontology via curl command as follows: curl -X POST -F file=@newsEvents.owl -F format=application/rdf+xml http://localhost:9090/ontonet/ontology/newsEvents -u "admin" 3. The uploaded ontology shows up [image: Inline image 2] 4. However, when trying to access the ontology it produces following error. [image: Inline image 1] Similarly for the following ontology [image: Inline image 3] Problem accessing /ontonet/ http://www.omg.org/spec/FIGI/GlobalInstrumentIdentifiers/:::http://www.omg.org/spec/FIGI/20140201/GlobalInstrumentIdentifiers/. Reason: Not Found *Couple questions:* 1. If it's not a valid ontology, why it is not complaining in the first place 2. If machine is connected to the internet and the file is accessible via browsing through URL http://www.aifb.uni-karlsruhe.de/WBS/uhe/ontologies/newsEvents.owl, why 404 occurs. 3. The delete doesn't seem to work. i.e. I can delete now newsEvents from Scope Manager however it leaves the effect and doesn't delete the newsEvents link 4. In some uploads, it throws following exception The failing instruction (print stack trace for 2 more): ==> #list it.manageableOntologies as mana... [in template "html/org/apache/stanbol/ontologymanager/web/resources/ScopeResource/index" at line 40, column 9] at org.glassfish.jersey.server.internal.MappableExceptionWrapperInterceptor.aroundWriteTo(MappableExceptionWrapperInterceptor.java:96) at org.glassfish.jersey.message.internal.WriterInterceptorExecutor.proceed(WriterInterceptorExecutor.java:162) at org.glassfish.jersey.message.internal.MessageBodyFactory.writeTo(MessageBodyFactory.java:1154) at org.glassfish.jersey.server.ServerRuntime$Responder.writeResponse(ServerRuntime.java:571) at org.glassfish.jersey.server.ServerRuntime$Responder.processResponse(ServerRuntime.java:378) at org.glassfish.jersey.server.ServerRuntime$Responder.process(ServerRuntime.java:368) at org.glassfish.jersey.server.ServerRuntime$1.run(ServerRuntime.java:262) at org.glassfish.jersey.internal.Errors$1.call(Errors.java:271) at org.glassfish.jersey.internal.Errors$1.call(Errors.java:267) at org.glassfish.jersey.internal.Errors.process(Errors.java:315) at org.glassfish.jersey.internal.Errors.process(Errors.java:297) at org.glassfish.jersey.internal.Errors.process(Errors.java:267) at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:320) at org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:236) at org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:1028) at org.glassfish.jersey.servlet.WebComponent.service(WebComponent.java:373) at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:381) at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:344) at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:219) at org.apache.felix.http.base.internal.handler.ServletHandler.doHandle(ServletHandler.java:336) at org.apache.felix.http.base.internal.handler.ServletHandler.handle(ServletHandler.java:297) at org.apache.felix.http.base.internal.dispatch.ServletPipeline.handle(ServletPipeline.java:93) at org.apache.felix.http.base.internal.dispatch.InvocationFilterChain.doFilter(InvocationFilterChain.java:50) at org.apache.felix.http.base.internal.dispatch.HttpFilterChain.doFilter(HttpFilterChain.java:31) at org.apache.stanbol.commons.httpqueryheaders.impl.QueryHeadersFilter.doFilter(QueryHeadersFilter.java:84) at org.apache.felix.http.base.internal.handler.FilterHandler.doHandle(FilterHandler.java:108) at org.apache.felix.http.base.internal.handler.FilterHandler.handle(FilterHandler.java:80) at org.apache.felix.http.base.internal.dispatch.InvocationFilterChain.doFilter(InvocationFilterChain.java:46) at org.apache.felix.http.base.internal.dispatch.HttpFilterChain.doFilter(HttpFilterChain.java:31) at com.thetransactioncompany.cors.CORSFilter.doFilter(CORSFilter.java:208) at com.thetransactioncompany.cors.CORSFilter.doFilter(CORSFilter.java:271) at org.apache.stanbol.commons.cors.StanbolCorsFilter.doFilter(StanbolCorsFilter.java:68) at org.apache.felix.http.base.internal.handler.FilterHandler.doHandle(FilterHandler.java:108) at org.apache.felix.http.base.internal.handler.FilterHandler.handle(FilterHandler.java:80) at org.apache.felix.http.base.internal.dispatch.InvocationFilterChain.doFilter(InvocationFilterChain.java:46) at org.apache.felix.http.base.internal.dispatch.HttpFilterChain.doFilter(HttpFilterChain.java:31) at org.apache.felix.http.base.internal.handler.FilterHandler.handle(FilterHandler.java:84) at org.apache.felix.http.base.internal.dispatch.InvocationFilterChain.doFilter(InvocationFilterChain.java:46) at org.apache.felix.http.base.internal.dispatch.HttpFilterChain.doFilter(HttpFilterChain.java:31) at org.apache.stanbol.commons.web.resources.ResourceServingFilter.doFilterHttp(ResourceServingFilter.java:148) at org.apache.stanbol.commons.web.resources.ResourceServingFilter.doFilter(ResourceServingFilter.java:91) at org.apache.felix.http.base.internal.handler.FilterHandler.doHandle(FilterHandler.java:108) at org.apache.felix.http.base.internal.handler.FilterHandler.handle(FilterHandler.java:80) at org.apache.felix.http.base.internal.dispatch.InvocationFilterChain.doFilter(InvocationFilterChain.java:46) at org.apache.felix.http.base.internal.dispatch.HttpFilterChain.doFilter(HttpFilterChain.java:31) at org.apache.stanbol.commons.security.auth.AuthenticatingFilter$1.run(AuthenticatingFilter.java:208) at java.security.AccessController.doPrivileged(Native Method) at javax.security.auth.Subject.doAsPrivileged(Subject.java:536) at org.apache.stanbol.commons.security.auth.AuthenticatingFilter.doFilter(AuthenticatingFilter.java:177) at org.apache.felix.http.base.internal.handler.FilterHandler.doHandle(FilterHandler.java:108) at org.apache.felix.http.base.internal.handler.FilterHandler.handle(FilterHandler.java:80) at org.apache.felix.http.base.internal.dispatch.InvocationFilterChain.doFilter(InvocationFilterChain.java:46) at org.apache.felix.http.base.internal.dispatch.HttpFilterChain.doFilter(HttpFilterChain.java:31) at org.apache.felix.http.base.internal.dispatch.FilterPipeline.dispatch(FilterPipeline.java:76) at org.apache.felix.http.base.internal.dispatch.Dispatcher.dispatch(Dispatcher.java:49) at org.apache.felix.http.base.internal.DispatcherServlet.service(DispatcherServlet.java:67) at javax.servlet.http.HttpServlet.service(HttpServlet.java:725) at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:808) at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:587) at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:221) at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1127) at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:515) at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:185) at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1061) at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141) at org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:215) at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:97) at org.eclipse.jetty.server.Server.handle(Server.java:497) at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:310) at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:257) at org.eclipse.jetty.io.AbstractConnection$2.run(AbstractConnection.java:540) at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:635) at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:555) at java.lang.Thread.run(Thread.java:745) Caused by: java.lang.RuntimeException: freemarker.template.TemplateModelException: get(manageableOntologies) failed on instance of org.apache.stanbol.ontologymanager.web.resources.ScopeResource. See cause exception. The failing instruction (print stack trace for 2 more): ==> #list it.manageableOntologies as mana... [in template "html/org/apache/stanbol/ontologymanager/web/resources/ScopeResource/index" at line 40, column 9] at org.apache.stanbol.commons.viewable.writer.impl.ViewableWriter.renderPojo(ViewableWriter.java:110) at org.apache.stanbol.commons.viewable.writer.impl.ViewableWriter.writeTo(ViewableWriter.java:78) at org.apache.stanbol.commons.viewable.writer.impl.ViewableWriter.writeTo(ViewableWriter.java:45) at org.glassfish.jersey.message.internal.WriterInterceptorExecutor$TerminalWriterInterceptor.invokeWriteTo(WriterInterceptorExecutor.java:263) at org.glassfish.jersey.message.internal.WriterInterceptorExecutor$TerminalWriterInterceptor.aroundWriteTo(WriterInterceptorExecutor.java:250) at org.glassfish.jersey.message.internal.WriterInterceptorExecutor.proceed(WriterInterceptorExecutor.java:162) at org.glassfish.jersey.server.internal.JsonWithPaddingInterceptor.aroundWriteTo(JsonWithPaddingInterceptor.java:103) at org.glassfish.jersey.message.internal.WriterInterceptorExecutor.proceed(WriterInterceptorExecutor.java:162) at org.glassfish.jersey.server.internal.MappableExceptionWrapperInterceptor.aroundWriteTo(MappableExceptionWrapperInterceptor.java:88) ... 73 more Caused by: freemarker.template.TemplateModelException: get(manageableOntologies) failed on instance of org.apache.stanbol.ontologymanager.web.resources.ScopeResource. See cause exception. The failing instruction (print stack trace for 2 more): ==> #list it.manageableOntologies as mana... [in template "html/org/apache/stanbol/ontologymanager/web/resources/ScopeResource/index" at line 40, column 9] at freemarker.ext.beans.BeanModel.get(BeanModel.java:222) at freemarker.core.Dot._eval(Dot.java:76) at freemarker.core.Expression.eval(Expression.java:111) at freemarker.core.IteratorBlock.accept(IteratorBlock.java:94) at freemarker.core.Environment.visit(Environment.java:265) at freemarker.core.MixedContent.accept(MixedContent.java:93) at freemarker.core.Environment.visit(Environment.java:265) at freemarker.core.Environment.visit(Environment.java:487) at freemarker.core.BodyInstruction.accept(BodyInstruction.java:93) at freemarker.core.Environment.visit(Environment.java:265) at freemarker.core.MixedContent.accept(MixedContent.java:93) at freemarker.core.Environment.visit(Environment.java:265) at freemarker.core.Macro$Context.runMacro(Macro.java:209) at freemarker.core.Environment.visit(Environment.java:694) at freemarker.core.UnifiedCall.accept(UnifiedCall.java:116) at freemarker.core.Environment.visit(Environment.java:265) at freemarker.core.EscapeBlock.accept(EscapeBlock.java:85) at freemarker.core.Environment.visit(Environment.java:265) at freemarker.core.MixedContent.accept(MixedContent.java:93) at freemarker.core.Environment.visit(Environment.java:265) at freemarker.core.Environment.process(Environment.java:243) at freemarker.template.Template.process(Template.java:277) at org.apache.stanbol.commons.viewable.writer.impl.ViewableWriter.renderPojo(ViewableWriter.java:103) ... 81 more Caused by: java.lang.reflect.InvocationTargetException at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:606) at freemarker.ext.beans.BeansWrapper.invokeMethod(BeansWrapper.java:912) at freemarker.ext.beans.BeanModel.invokeThroughDescriptor(BeanModel.java:275) at freemarker.ext.beans.BeanModel.get(BeanModel.java:182) ... 103 more Caused by: java.security.AccessControlException: access denied ("org.apache.clerezza.rdf.core.access.security.TcPermission" "urn:x-localinstance:/ontologymanager.graph" "read") at java.security.AccessControlContext.checkPermission(AccessControlContext.java:372) at java.security.AccessController.checkPermission(AccessController.java:559) at org.apache.clerezza.rdf.core.access.security.TcAccessController.checkReadPermission(TcAccessController.java:107) at org.apache.clerezza.rdf.core.access.TcManager.getTriples(TcManager.java:208) at org.apache.stanbol.ontologymanager.multiplexer.clerezza.ontology.ClerezzaOntologyProvider.getMetaGraph(ClerezzaOntologyProvider.java:676) at org.apache.stanbol.ontologymanager.multiplexer.clerezza.ontology.ClerezzaOntologyProvider$OntologyToTcMapper.buildResource(ClerezzaOntologyProvider.java:218) at org.apache.stanbol.ontologymanager.multiplexer.clerezza.ontology.ClerezzaOntologyProvider$OntologyToTcMapper.getMapping(ClerezzaOntologyProvider.java:277) at org.apache.stanbol.ontologymanager.multiplexer.clerezza.ontology.ClerezzaOntologyProvider.listPrimaryKeys(ClerezzaOntologyProvider.java:1067) at org.apache.stanbol.ontologymanager.multiplexer.clerezza.ontology.ClerezzaOntologyProvider.listPrimaryKeys(ClerezzaOntologyProvider.java:129) at org.apache.stanbol.ontologymanager.web.resources.ScopeResource.getManageableOntologies(ScopeResource.java:342) ... 110 more
