Hi Rupert, I believe, they seem to have changed path to RDF file as follows:
*http://www.omg.org/spec/FIGI/20140201/GlobalInstrumentIdentifiers-odm.xmi <http://www.omg.org/spec/FIGI/20140201/GlobalInstrumentIdentifiers-odm.xmi>* I am not sure, whether do I need to manually change the path in RDF file itself <!DOCTYPE rdf:RDF [ <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#"; > <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#"; > <!ENTITY owl "http://www.w3.org/2002/07/owl#"; > <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#"; > <!ENTITY dct "http://purl.org/dc/terms/"; > <!ENTITY skos "http://www.w3.org/2004/02/skos/core#"; > <!ENTITY sm "http://www.omg.org/techprocess/ab/SpecificationMetadata/"; > <!ENTITY figi-gii " http://www.omg.org/spec/FIGI/GlobalInstrumentIdentifiers/"; > ]> <rdf:RDF xmlns="http://www.omg.org/spec/FIGI/GlobalInstrumentIdentifiers/"; xml:base="http://www.omg.org/spec/FIGI/GlobalInstrumentIdentifiers/"; xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"; xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"; Thanks, Rajan On Fri, May 22, 2015 at 10:04 AM, Rajan Shah <raja...@gmail.com> wrote: > Hi Rupert, > > Thanks again! > > These exceptions are gone, however it still doesn't work. > > *1. ScopeManager* > Scope: GlobalInstrumentIdentifiers [exists] > > *2. Request to upload the file* > > curl -X POST -F file=@GlobalInstrumentIdentifiers.rdf -F > format=application/rdf+xml > http://localhost:9090/ontonet/ontology/GlobalInstrumentIdentifiers > > *3. It generates following response.* > > <title>Error 400 </title> > </head> > <body> > <h2>HTTP ERROR: 400</h2> > <p>Problem accessing /ontonet/ontology/GlobalInstrumentIdentifiers. Reason: > <pre> Bad Request</pre></p> > <hr /><i><small>Powered by Jetty://</small></i> > </body> > </html> > > Again, the file can be loaded within webprotege without any issue. I am > not sure, whether I am missing anything here. I have attached the file for > your reference and can also be accessed via > http://www.omg.org/spec/FIGI/GlobalInstrumentIdentifiers/. > > With best regards, > Rajan > > On Fri, May 22, 2015 at 9:35 AM, Rupert Westenthaler < > rupert.westentha...@gmail.com> wrote: > >> Hi Rajan, >> >> Looks like if the root cause is a Security Exception. Can you try to >> launch Stanbol with the '-no-security' option. >> >> BTW: Images do get removed when sending mails to the list. So if you >> want to share screenshot you need to put them on the Web and link to >> them in the mail. >> >> best >> Rupert >> >> >> On Fri, May 22, 2015 at 3:23 PM, Rajan Shah <raja...@gmail.com> wrote: >> > Hi, >> > >> > I have observed following issue with ontology upload. >> > >> > a. Upload becomes successful, however access is not possible >> > b. Delete doesn't seem to work >> > c. Exception is being thrown while uploading a new ontology >> > >> > I would appreciate, if someone can help out pertaining to these issues. >> > Please find included detailed description at the end. >> > >> > Thanks in advance, >> > Rajan >> > >> > Steps to re-crate: >> > >> > 1. Create new scope "newsEvents" from the Scope Manager >> > 2. Upload the ontology via curl command as follows: >> > >> > curl -X POST -F file=@newsEvents.owl -F format=application/rdf+xml >> > http://localhost:9090/ontonet/ontology/newsEvents -u "admin" >> > >> > 3. The uploaded ontology shows up >> > >> > >> > >> > 4. However, when trying to access the ontology it produces following >> error. >> > >> > >> > >> > Similarly for the following ontology >> > >> > >> > >> > >> > Problem accessing >> > /ontonet/ >> http://www.omg.org/spec/FIGI/GlobalInstrumentIdentifiers/:::http://www.omg.org/spec/FIGI/20140201/GlobalInstrumentIdentifiers/ >> . >> > Reason: >> > >> > Not Found >> > >> > >> > Couple questions: >> > >> > 1. If it's not a valid ontology, why it is not complaining in the first >> > place >> > >> > 2. If machine is connected to the internet and the file is accessible >> via >> > browsing through URL >> > http://www.aifb.uni-karlsruhe.de/WBS/uhe/ontologies/newsEvents.owl, >> why 404 >> > occurs. >> > >> > 3. The delete doesn't seem to work. i.e. I can delete now newsEvents >> from >> > Scope Manager however it leaves the effect and doesn't delete the >> newsEvents >> > link >> > >> > 4. In some uploads, it throws following exception >> > >> > The failing instruction (print stack trace for 2 more): >> > ==> #list it.manageableOntologies as mana... [in template >> > >> "html/org/apache/stanbol/ontologymanager/web/resources/ScopeResource/index" >> > at line 40, column 9] >> > at >> > >> org.glassfish.jersey.server.internal.MappableExceptionWrapperInterceptor.aroundWriteTo(MappableExceptionWrapperInterceptor.java:96) >> > at >> > >> org.glassfish.jersey.message.internal.WriterInterceptorExecutor.proceed(WriterInterceptorExecutor.java:162) >> > at >> > >> org.glassfish.jersey.message.internal.MessageBodyFactory.writeTo(MessageBodyFactory.java:1154) >> > at >> > >> org.glassfish.jersey.server.ServerRuntime$Responder.writeResponse(ServerRuntime.java:571) >> > at >> > >> org.glassfish.jersey.server.ServerRuntime$Responder.processResponse(ServerRuntime.java:378) >> > at >> > >> org.glassfish.jersey.server.ServerRuntime$Responder.process(ServerRuntime.java:368) >> > at >> org.glassfish.jersey.server.ServerRuntime$1.run(ServerRuntime.java:262) >> > at org.glassfish.jersey.internal.Errors$1.call(Errors.java:271) >> > at org.glassfish.jersey.internal.Errors$1.call(Errors.java:267) >> > at org.glassfish.jersey.internal.Errors.process(Errors.java:315) >> > at org.glassfish.jersey.internal.Errors.process(Errors.java:297) >> > at org.glassfish.jersey.internal.Errors.process(Errors.java:267) >> > at >> > >> org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:320) >> > at >> org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:236) >> > at >> > >> org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:1028) >> > at >> org.glassfish.jersey.servlet.WebComponent.service(WebComponent.java:373) >> > at >> > >> org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:381) >> > at >> > >> org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:344) >> > at >> > >> org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:219) >> > at >> > >> org.apache.felix.http.base.internal.handler.ServletHandler.doHandle(ServletHandler.java:336) >> > at >> > >> org.apache.felix.http.base.internal.handler.ServletHandler.handle(ServletHandler.java:297) >> > at >> > >> org.apache.felix.http.base.internal.dispatch.ServletPipeline.handle(ServletPipeline.java:93) >> > at >> > >> org.apache.felix.http.base.internal.dispatch.InvocationFilterChain.doFilter(InvocationFilterChain.java:50) >> > at >> > >> org.apache.felix.http.base.internal.dispatch.HttpFilterChain.doFilter(HttpFilterChain.java:31) >> > at >> > >> org.apache.stanbol.commons.httpqueryheaders.impl.QueryHeadersFilter.doFilter(QueryHeadersFilter.java:84) >> > at >> > >> org.apache.felix.http.base.internal.handler.FilterHandler.doHandle(FilterHandler.java:108) >> > at >> > >> org.apache.felix.http.base.internal.handler.FilterHandler.handle(FilterHandler.java:80) >> > at >> > >> org.apache.felix.http.base.internal.dispatch.InvocationFilterChain.doFilter(InvocationFilterChain.java:46) >> > at >> > >> org.apache.felix.http.base.internal.dispatch.HttpFilterChain.doFilter(HttpFilterChain.java:31) >> > at >> com.thetransactioncompany.cors.CORSFilter.doFilter(CORSFilter.java:208) >> > at >> com.thetransactioncompany.cors.CORSFilter.doFilter(CORSFilter.java:271) >> > at >> > >> org.apache.stanbol.commons.cors.StanbolCorsFilter.doFilter(StanbolCorsFilter.java:68) >> > at >> > >> org.apache.felix.http.base.internal.handler.FilterHandler.doHandle(FilterHandler.java:108) >> > at >> > >> org.apache.felix.http.base.internal.handler.FilterHandler.handle(FilterHandler.java:80) >> > at >> > >> org.apache.felix.http.base.internal.dispatch.InvocationFilterChain.doFilter(InvocationFilterChain.java:46) >> > at >> > >> org.apache.felix.http.base.internal.dispatch.HttpFilterChain.doFilter(HttpFilterChain.java:31) >> > at >> > >> org.apache.felix.http.base.internal.handler.FilterHandler.handle(FilterHandler.java:84) >> > at >> > >> org.apache.felix.http.base.internal.dispatch.InvocationFilterChain.doFilter(InvocationFilterChain.java:46) >> > at >> > >> org.apache.felix.http.base.internal.dispatch.HttpFilterChain.doFilter(HttpFilterChain.java:31) >> > at >> > >> org.apache.stanbol.commons.web.resources.ResourceServingFilter.doFilterHttp(ResourceServingFilter.java:148) >> > at >> > >> org.apache.stanbol.commons.web.resources.ResourceServingFilter.doFilter(ResourceServingFilter.java:91) >> > at >> > >> org.apache.felix.http.base.internal.handler.FilterHandler.doHandle(FilterHandler.java:108) >> > at >> > >> org.apache.felix.http.base.internal.handler.FilterHandler.handle(FilterHandler.java:80) >> > at >> > >> org.apache.felix.http.base.internal.dispatch.InvocationFilterChain.doFilter(InvocationFilterChain.java:46) >> > at >> > >> org.apache.felix.http.base.internal.dispatch.HttpFilterChain.doFilter(HttpFilterChain.java:31) >> > at >> > >> org.apache.stanbol.commons.security.auth.AuthenticatingFilter$1.run(AuthenticatingFilter.java:208) >> > at java.security.AccessController.doPrivileged(Native Method) >> > at javax.security.auth.Subject.doAsPrivileged(Subject.java:536) >> > at >> > >> org.apache.stanbol.commons.security.auth.AuthenticatingFilter.doFilter(AuthenticatingFilter.java:177) >> > at >> > >> org.apache.felix.http.base.internal.handler.FilterHandler.doHandle(FilterHandler.java:108) >> > at >> > >> org.apache.felix.http.base.internal.handler.FilterHandler.handle(FilterHandler.java:80) >> > at >> > >> org.apache.felix.http.base.internal.dispatch.InvocationFilterChain.doFilter(InvocationFilterChain.java:46) >> > at >> > >> org.apache.felix.http.base.internal.dispatch.HttpFilterChain.doFilter(HttpFilterChain.java:31) >> > at >> > >> org.apache.felix.http.base.internal.dispatch.FilterPipeline.dispatch(FilterPipeline.java:76) >> > at >> > >> org.apache.felix.http.base.internal.dispatch.Dispatcher.dispatch(Dispatcher.java:49) >> > at >> > >> org.apache.felix.http.base.internal.DispatcherServlet.service(DispatcherServlet.java:67) >> > at javax.servlet.http.HttpServlet.service(HttpServlet.java:725) >> > at >> org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:808) >> > at >> > >> org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:587) >> > at >> > >> org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:221) >> > at >> > >> org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1127) >> > at >> org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:515) >> > at >> > >> org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:185) >> > at >> > >> org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1061) >> > at >> > >> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141) >> > at >> > >> org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:215) >> > at >> > >> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:97) >> > at org.eclipse.jetty.server.Server.handle(Server.java:497) >> > at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:310) >> > at >> > >> org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:257) >> > at >> > >> org.eclipse.jetty.io.AbstractConnection$2.run(AbstractConnection.java:540) >> > at >> > >> org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:635) >> > at >> > >> org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:555) >> > at java.lang.Thread.run(Thread.java:745) >> > Caused by: java.lang.RuntimeException: >> > freemarker.template.TemplateModelException: get(manageableOntologies) >> failed >> > on instance of >> > org.apache.stanbol.ontologymanager.web.resources.ScopeResource. See >> cause >> > exception. >> > >> > The failing instruction (print stack trace for 2 more): >> > ==> #list it.manageableOntologies as mana... [in template >> > >> "html/org/apache/stanbol/ontologymanager/web/resources/ScopeResource/index" >> > at line 40, column 9] >> > at >> > >> org.apache.stanbol.commons.viewable.writer.impl.ViewableWriter.renderPojo(ViewableWriter.java:110) >> > at >> > >> org.apache.stanbol.commons.viewable.writer.impl.ViewableWriter.writeTo(ViewableWriter.java:78) >> > at >> > >> org.apache.stanbol.commons.viewable.writer.impl.ViewableWriter.writeTo(ViewableWriter.java:45) >> > at >> > >> org.glassfish.jersey.message.internal.WriterInterceptorExecutor$TerminalWriterInterceptor.invokeWriteTo(WriterInterceptorExecutor.java:263) >> > at >> > >> org.glassfish.jersey.message.internal.WriterInterceptorExecutor$TerminalWriterInterceptor.aroundWriteTo(WriterInterceptorExecutor.java:250) >> > at >> > >> org.glassfish.jersey.message.internal.WriterInterceptorExecutor.proceed(WriterInterceptorExecutor.java:162) >> > at >> > >> org.glassfish.jersey.server.internal.JsonWithPaddingInterceptor.aroundWriteTo(JsonWithPaddingInterceptor.java:103) >> > at >> > >> org.glassfish.jersey.message.internal.WriterInterceptorExecutor.proceed(WriterInterceptorExecutor.java:162) >> > at >> > >> org.glassfish.jersey.server.internal.MappableExceptionWrapperInterceptor.aroundWriteTo(MappableExceptionWrapperInterceptor.java:88) >> > ... 73 more >> > Caused by: freemarker.template.TemplateModelException: >> > get(manageableOntologies) failed on instance of >> > org.apache.stanbol.ontologymanager.web.resources.ScopeResource. See >> cause >> > exception. >> > >> > The failing instruction (print stack trace for 2 more): >> > ==> #list it.manageableOntologies as mana... [in template >> > >> "html/org/apache/stanbol/ontologymanager/web/resources/ScopeResource/index" >> > at line 40, column 9] >> > at freemarker.ext.beans.BeanModel.get(BeanModel.java:222) >> > at freemarker.core.Dot._eval(Dot.java:76) >> > at freemarker.core.Expression.eval(Expression.java:111) >> > at freemarker.core.IteratorBlock.accept(IteratorBlock.java:94) >> > at freemarker.core.Environment.visit(Environment.java:265) >> > at freemarker.core.MixedContent.accept(MixedContent.java:93) >> > at freemarker.core.Environment.visit(Environment.java:265) >> > at freemarker.core.Environment.visit(Environment.java:487) >> > at freemarker.core.BodyInstruction.accept(BodyInstruction.java:93) >> > at freemarker.core.Environment.visit(Environment.java:265) >> > at freemarker.core.MixedContent.accept(MixedContent.java:93) >> > at freemarker.core.Environment.visit(Environment.java:265) >> > at freemarker.core.Macro$Context.runMacro(Macro.java:209) >> > at freemarker.core.Environment.visit(Environment.java:694) >> > at freemarker.core.UnifiedCall.accept(UnifiedCall.java:116) >> > at freemarker.core.Environment.visit(Environment.java:265) >> > at freemarker.core.EscapeBlock.accept(EscapeBlock.java:85) >> > at freemarker.core.Environment.visit(Environment.java:265) >> > at freemarker.core.MixedContent.accept(MixedContent.java:93) >> > at freemarker.core.Environment.visit(Environment.java:265) >> > at freemarker.core.Environment.process(Environment.java:243) >> > at freemarker.template.Template.process(Template.java:277) >> > at >> > >> org.apache.stanbol.commons.viewable.writer.impl.ViewableWriter.renderPojo(ViewableWriter.java:103) >> > ... 81 more >> > Caused by: java.lang.reflect.InvocationTargetException >> > at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) >> > at >> > >> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) >> > at >> > >> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) >> > at java.lang.reflect.Method.invoke(Method.java:606) >> > at freemarker.ext.beans.BeansWrapper.invokeMethod(BeansWrapper.java:912) >> > at >> > >> freemarker.ext.beans.BeanModel.invokeThroughDescriptor(BeanModel.java:275) >> > at freemarker.ext.beans.BeanModel.get(BeanModel.java:182) >> > ... 103 more >> > Caused by: java.security.AccessControlException: access denied >> > ("org.apache.clerezza.rdf.core.access.security.TcPermission" >> > "urn:x-localinstance:/ontologymanager.graph" "read") >> > at >> > >> java.security.AccessControlContext.checkPermission(AccessControlContext.java:372) >> > at >> java.security.AccessController.checkPermission(AccessController.java:559) >> > at >> > >> org.apache.clerezza.rdf.core.access.security.TcAccessController.checkReadPermission(TcAccessController.java:107) >> > at >> > >> org.apache.clerezza.rdf.core.access.TcManager.getTriples(TcManager.java:208) >> > at >> > >> org.apache.stanbol.ontologymanager.multiplexer.clerezza.ontology.ClerezzaOntologyProvider.getMetaGraph(ClerezzaOntologyProvider.java:676) >> > at >> > >> org.apache.stanbol.ontologymanager.multiplexer.clerezza.ontology.ClerezzaOntologyProvider$OntologyToTcMapper.buildResource(ClerezzaOntologyProvider.java:218) >> > at >> > >> org.apache.stanbol.ontologymanager.multiplexer.clerezza.ontology.ClerezzaOntologyProvider$OntologyToTcMapper.getMapping(ClerezzaOntologyProvider.java:277) >> > at >> > >> org.apache.stanbol.ontologymanager.multiplexer.clerezza.ontology.ClerezzaOntologyProvider.listPrimaryKeys(ClerezzaOntologyProvider.java:1067) >> > at >> > >> org.apache.stanbol.ontologymanager.multiplexer.clerezza.ontology.ClerezzaOntologyProvider.listPrimaryKeys(ClerezzaOntologyProvider.java:129) >> > at >> > >> org.apache.stanbol.ontologymanager.web.resources.ScopeResource.getManageableOntologies(ScopeResource.java:342) >> > ... 110 more >> > >> > >> > >> >> >> >> -- >> | Rupert Westenthaler rupert.westentha...@gmail.com >> | Bodenlehenstraße 11 ++43-699-11108907 >> | A-5500 Bischofshofen >> | REDLINK.CO >> .......................................................................... >> | http://redlink.co/ >> > >
