See https://github.com/open-mpi/ompi/pull/298 for a fix.

There's 2 commits on that PR -- the 2nd is just a cleanup.  The real fix is the 
1st commit, here:

https://github.com/jsquyres/ompi/commit/a736d83fb9a7b27986a008a2cda6eb1fea839fb3

If someone can confirm that this works for them, we can bring it to master.

It may have the side effect of "fixing / working around" (by coincidence) the 
SLURM bug (we all agree that the Right solution is to have SLURM fix it 
upstream, but I think this will put us back in the case of "working by accident 
/ despite the SLURM bug").



On Dec 2, 2014, at 10:59 AM, Jeff Squyres (jsquyres) <jsquy...@cisco.com> wrote:

> I'm able to replicate Edgar's problem.
> 
> I'm investigating...
> 
> 
> On Dec 2, 2014, at 10:39 AM, Edgar Gabriel <gabr...@cs.uh.edu> wrote:
> 
>> the mailing list refused to let me add the config.log file, since it is too 
>> large, I can forward the output to you directly as well (as I did to Jeff).
>> 
>> I honestly have not looked into the configure logic, I can just tell that 
>> OPAL_HAVE_LTDL_ADVISE is not set on my linux system for master, but is set 
>> on the 1.8 series (1.8 series checkout was from Nov. 20, so if something 
>> changed in between the result might be different).
>> 
>> 
>> 
>> On 12/2/2014 9:27 AM, Artem Polyakov wrote:
>>> 
>>> 2014-12-02 20:59 GMT+06:00 Edgar Gabriel <gabr...@cs.uh.edu
>>> <mailto:gabr...@cs.uh.edu>>:
>>> 
>>>   didn't want to interfere with this thread, although I have a similar
>>>   issue, since I have the solution nearly fully cooked up. But anyway,
>>>   this last email gave the hint on why we have suddenly the problem in
>>>   ompio:
>>> 
>>>   it looks like OPAL_HAVE_LTDL_ADVISE (at least on my systems) is not
>>>   set anymore, so the entire section is being skipped. I double
>>>   checked that with the 1.8 branch, it goes through the section, but
>>>   not with master.
>>> 
>>> 
>>> Hi, Edgar.
>>> 
>>> Both master and ompi-release (isn't it 1.8?!) are equal in sence of my
>>> fix. Something else!? I'd like to see config.log too but will look into
>>> it only tomorrow.
>>> 
>>> Also I want to add that SLURM PMI2 communicates with local slurmstepd's
>>> and doesn't need any authentification. All PMI1 processes otherwise
>>> communicate to the srun process and thus need libslurm services for
>>> communication and authentification.
>>> 
>>> 
>>>   Thanks
>>>   Edgar
>>> 
>>> 
>>> 
>>> 
>>>   On 12/2/2014 7:56 AM, Jeff Squyres (jsquyres) wrote:
>>> 
>>>       Looks like I was totally lying in
>>>       http://www.open-mpi.org/__community/lists/devel/2014/12/__16381.php
>>>       <http://www.open-mpi.org/community/lists/devel/2014/12/16381.php> 
>>> (where
>>>       I said we should not use RTLD_GLOBAL).  We *do* use RTLD_GLOBAL:
>>> 
>>>       
>>> https://github.com/open-mpi/__ompi/blob/master/opal/mca/__base/mca_base_component___repository.c#L124
>>>       
>>> <https://github.com/open-mpi/ompi/blob/master/opal/mca/base/mca_base_component_repository.c#L124>
>>> 
>>>       This ltdl advice object is passed to lt_dlopen() for all
>>>       components.  My mistake; sorry.
>>> 
>>>       So the idea that using RTLD_GLOBAL will fix this SLURM bug is
>>>       incorrect.
>>> 
>>>       I believe someone said earlier in the thread that adding the
>>>       right -llibs to the configure line will solve the issue, and
>>>       that sounds correct to me.  If there's a missing symbol because
>>>       the SLURM libraries are not automatically pulling in the right
>>>       dependent libraries, then *if* we put a workaround in OMPI to
>>>       fix this issue, then the right workaround is to add the relevant
>>>       -llibs when that component is linked.
>>> 
>>>       *If* you add that workaround (which is a whole separate
>>>       discussion), I would suggest adding a configure.m4 test to see
>>>       if adding the additional -llibs are necessary.  Perhaps
>>>       AC_LINK_IFELSE looking for a symbol, and then if that fails,
>>>       AC_LINK_IFELSE again with the additional -llibs to see if that
>>>       works.
>>> 
>>>       Or something like that.
>>> 
>>> 
>>> 
>>>       On Dec 2, 2014, at 6:38 AM, Artem Polyakov <artpo...@gmail.com
>>>       <mailto:artpo...@gmail.com>> wrote:
>>> 
>>>           Agree. First you should check is to what value
>>>           OPAL_HAVE_LTDL_ADVISE is set. If it is zero - very probably
>>>           this is the same bug as mine.
>>> 
>>>           2014-12-02 17:33 GMT+06:00 Ralph Castain <r...@open-mpi.org
>>>           <mailto:r...@open-mpi.org>>:
>>>           It does look similar - question is: why didn’t this fix the
>>>           problem? Will have to investigate.
>>> 
>>>           Thanks
>>> 
>>> 
>>>               On Dec 2, 2014, at 3:17 AM, Artem Polyakov
>>>               <artpo...@gmail.com <mailto:artpo...@gmail.com>> wrote:
>>> 
>>> 
>>> 
>>>               2014-12-02 17:13 GMT+06:00 Ralph Castain
>>>               <r...@open-mpi.org <mailto:r...@open-mpi.org>>:
>>>               Hmmm…if that is true, then it didn’t fix this problem as
>>>               it is being reported in the master.
>>> 
>>>               I had this problem on my laptop installation. You can
>>>               check my report it was detailed enough and see if you
>>>               hitting the same issue. My fix was also included into
>>>               1.8 branch. I am not sure that this is the same issue
>>>               but they looks similar.
>>> 
>>> 
>>> 
>>>                   On Dec 1, 2014, at 9:40 PM, Artem Polyakov
>>>                   <artpo...@gmail.com <mailto:artpo...@gmail.com>> wrote:
>>> 
>>>                   I think this might be related to the configuration
>>>                   problem I was fixing with Jeff few months ago. Refer
>>>                   here:
>>>                   https://github.com/open-mpi/__ompi/pull/240
>>>                   <https://github.com/open-mpi/ompi/pull/240>
>>> 
>>>                   2014-12-02 10:15 GMT+06:00 Ralph Castain
>>>                   <r...@open-mpi.org <mailto:r...@open-mpi.org>>:
>>>                   If it isn’t too much trouble, it would be good to
>>>                   confirm that it remains broken. I strongly suspect
>>>                   it is based on Moe’s comments.
>>> 
>>>                   Obviously, other people are making this work. For
>>>                   Intel MPI, all you do is point it at libpmi and they
>>>                   can run. However, they do explicitly dlopen it in
>>>                   their code, and I don’t know what flags they might
>>>                   pass when they do so.
>>> 
>>>                   If necessary, I suppose we could follow that
>>>                   pattern. In other words, rather than specifically
>>>                   linking the “s1” component to libpmi, instead
>>>                   require that the user point us to a pmi library via
>>>                   an MCA param, then explicitly dlopen that library
>>>                   with RTLD_GLOBAL. This avoids the issues cited by
>>>                   Jeff, but resolves the pmi linkage problem.
>>> 
>>> 
>>>                       On Dec 1, 2014, at 8:09 PM, Gilles Gouaillardet
>>>                       <gilles.gouaillar...@iferc.org
>>>                       <mailto:gilles.gouaillar...@iferc.org>__> wrote:
>>> 
>>>                       $ srun --version
>>>                       slurm 2.6.6-VENDOR_PROVIDED
>>> 
>>>                       $ srun --mpi=pmi2 -n 1 ~/hw
>>>                       I am 0 / 1
>>> 
>>>                       $ srun -n 1 ~/hw
>>>                       /csc/home1/gouaillardet/hw: symbol lookup error:
>>>                       /usr/lib64/slurm/auth_munge.__so: undefined
>>>                       symbol: slurm_verbose
>>>                       srun: error: slurm_receive_msg: Zero Bytes were
>>>                       transmitted or received
>>>                       srun: error: slurm_receive_msg[10.0.3.15]: Zero
>>>                       Bytes were transmitted or received
>>>                       srun: error: soleil: task 0: Exited with exit
>>>                       code 127
>>> 
>>>                       $ ldd /usr/lib64/slurm/auth_munge.so
>>>                             linux-vdso.so.1 =>  (0x00007fff54478000)
>>>                             libmunge.so.2 => /usr/lib64/libmunge.so.2
>>>                       (0x00007f744760f000)
>>>                             libpthread.so.0 => /lib64/libpthread.so.0
>>>                       (0x00007f74473f1000)
>>>                             libc.so.6 => /lib64/libc.so.6
>>>                       (0x00007f744705d000)
>>>                             /lib64/ld-linux-x86-64.so.2
>>>                       (0x0000003bf5400000)
>>> 
>>> 
>>>                       now, if i reling auth_munge.so so it depends on
>>>                       libslurm :
>>> 
>>>                       $ srun -n 1 ~/hw
>>>                       srun: symbol lookup error:
>>>                       /usr/lib64/slurm/auth_munge.__so: undefined
>>>                       symbol: slurm_auth_get_arg_desc
>>> 
>>> 
>>>                       i can give a try to the latest slurm if needed
>>> 
>>>                       Cheers,
>>> 
>>>                       Gilles
>>> 
>>> 
>>>                       On 2014/12/02 12:56, Ralph Castain wrote:
>>> 
>>>                           Out of curiosity - how are you testing
>>>                           these? I have more current versions of Slurm
>>>                           and would like to test the observations there.
>>> 
>>> 
>>>                               On Dec 1, 2014, at 7:49 PM, Gilles
>>>                               Gouaillardet
>>>                               <gilles.gouaillar...@iferc.org
>>>                               <mailto:gilles.gouaillar...@iferc.org>__>
>>>                                  wrote:
>>> 
>>>                               I d like to make a step back ...
>>> 
>>>                               i previously tested with slurm 2.6.0,
>>>                               and it complained about the
>>>                               slurm_verbose symbol that is defined in
>>>                               libslurm.so
>>>                               so with slurm 2.6.0, RTLD_GLOBAL or
>>>                               relinking is ok
>>> 
>>>                               now i tested with slurm 2.6.6 and it
>>>                               complains about the
>>>                               slurm_auth_get_arg_desc symbol, and this
>>>                               symbol is not
>>>                               defined in any dynamic library. it is
>>>                               internally defined in the static
>>>                               libcommon.a library, which is used to
>>>                               build the slurm binaries.
>>> 
>>>                               as far as i understand, auth_munge.so
>>>                               can only be invoked from a slurm binary,
>>>                               which means it cannot be invoked from an
>>>                               mpi application
>>>                               even if it is linked with libslurm,
>>>                               libpmi, ...
>>> 
>>>                               that looks like a slurm design issue
>>>                               that the slurm folks will take care of.
>>> 
>>>                               Cheers,
>>> 
>>>                               Gilles
>>> 
>>>                               On 2014/12/02 12:33, Ralph Castain wrote:
>>> 
>>>                                   Another option is to simply add the
>>>                                   -lslurm -lauth flags to the pmix/s1
>>>                                   component as this is the only place
>>>                                   that requires it, and it won’t hurt
>>>                                   anything to do so.
>>> 
>>> 
>>> 
>>>                                       On Dec 1, 2014, at 6:03 PM,
>>>                                       Gilles Gouaillardet
>>>                                       <gilles.gouaillar...@iferc.org
>>>                                       
>>> <mailto:gilles.gouaillar...@iferc.org>__>
>>>                                       
>>> <mailto:gilles.gouaillardet@__iferc.org
>>>                                       
>>> <mailto:gilles.gouaillar...@iferc.org>>
>>>                                          wrote:
>>> 
>>>                                       Jeff,
>>> 
>>>                                       FWIW, you can read my analysis
>>>                                       of what is going wrong at
>>> 
>>>                                       
>>> http://www.open-mpi.org/__community/lists/pmix-devel/__2014/11/0293.php
>>>                                       
>>> <http://www.open-mpi.org/community/lists/pmix-devel/2014/11/0293.php>
>>>                                       
>>> <http://www.open-mpi.org/__community/lists/pmix-devel/__2014/11/0293.php
>>>                                       
>>> <http://www.open-mpi.org/community/lists/pmix-devel/2014/11/0293.php>>
>>>                                       
>>> <http://www.open-mpi.org/__community/lists/pmix-devel/__2014/11/0293.php
>>>                                       
>>> <http://www.open-mpi.org/community/lists/pmix-devel/2014/11/0293.php>>
>>>                                       
>>> <http://www.open-mpi.org/__community/lists/pmix-devel/__2014/11/0293.php
>>>                                       
>>> <http://www.open-mpi.org/community/lists/pmix-devel/2014/11/0293.php>>
>>> 
>>> 
>>>                                       bottom line, i agree this is a
>>>                                       slurm issue (slurm plugin should
>>>                                       depend
>>>                                       on libslurm, but they do not, yet)
>>> 
>>>                                       a possible workaround would be
>>>                                       to make the pmi component a
>>>                                       "proxy" that
>>>                                       dlopen with RTLD_GLOBAL the
>>>                                       "real" component in which the
>>>                                       job is done.
>>>                                       that being said, the impact is
>>>                                       quite limited (no direct launch
>>>                                       in slurm
>>>                                       with pmi1, but pmi2 works fine)
>>>                                       so it makes sense not to work around
>>>                                       someone else problem.
>>>                                       and that being said, configure
>>>                                       could detect this broken pmi1
>>>                                       and not
>>>                                       build pmi1 support or print a
>>>                                       user friendly error message if
>>>                                       pmi1 is used.
>>> 
>>>                                       any thoughts ?
>>> 
>>>                                       Cheers,
>>> 
>>>                                       Gilles
>>> 
>>>                                       On 2014/12/02 7:47, Jeff Squyres
>>>                                       (jsquyres) wrote:
>>> 
>>>                                           Ok, if the problem is moot,
>>>                                           great.
>>> 
>>>                                           (sidenote: this is moot, so
>>>                                           ignore this if you want:
>>>                                           with this explanation, I'm
>>>                                           still not sure how
>>>                                           RTLD_GLOBAL fixes the issue)
>>> 
>>> 
>>>                                           On Dec 1, 2014, at 5:15 PM,
>>>                                           Ralph Castain
>>>                                           <r...@open-mpi.org
>>>                                           <mailto:r...@open-mpi.org>>
>>>                                           <mailto:r...@open-mpi.org
>>>                                           <mailto:r...@open-mpi.org>>
>>>                                              wrote:
>>> 
>>> 
>>>                                               Easy enough to explain.
>>>                                               We link libpmi into the
>>>                                               pmix/s1 component. This
>>>                                               library is missing the
>>>                                               linkage to libslurm that
>>>                                               contains the linkage to
>>>                                               libauth where munge
>>>                                               resides. So when we call
>>>                                               a PMI function, libpmi
>>>                                               references a call to
>>>                                               munge for authentication
>>>                                               and hits an “unresolved
>>>                                               symbol” error.
>>> 
>>>                                               Moe acknowledges the
>>>                                               error is in Slurm and is
>>>                                               fixing the linkages so
>>>                                               this problem goes away
>>> 
>>> 
>>> 
>>>                                                   On Dec 1, 2014, at
>>>                                                   2:13 PM, Jeff
>>>                                                   Squyres (jsquyres)
>>>                                                   <jsquy...@cisco.com
>>>                                                   
>>> <mailto:jsquy...@cisco.com>>
>>>                                                   <mailto:jsquy...@cisco.com
>>>                                                   
>>> <mailto:jsquy...@cisco.com>>
>>>                                                      wrote:
>>> 
>>>                                                   On Dec 1, 2014, at
>>>                                                   5:07 PM, Ralph Castain
>>>                                                   <r...@open-mpi.org
>>>                                                   
>>> <mailto:r...@open-mpi.org>>
>>>                                                   <mailto:r...@open-mpi.org
>>>                                                   
>>> <mailto:r...@open-mpi.org>>
>>>                                                      wrote:
>>> 
>>> 
>>>                                                       FWIW: It’s
>>>                                                       Slurm’s pmi-1
>>>                                                       library that
>>>                                                       isn’t linked
>>>                                                       correctly
>>>                                                       against its
>>>                                                       dependencies
>>>                                                       (the pmi-2 one
>>>                                                       is correct).
>>>                                                       Moe is aware of
>>>                                                       the problem and
>>>                                                       fixing it on
>>>                                                       their side. This
>>>                                                       won’t help
>>>                                                       existing
>>>                                                       installations
>>>                                                       until they
>>>                                                       upgrade, but I
>>>                                                       tend to agree
>>>                                                       with Jeff about
>>>                                                       not fixing other
>>>                                                       people’s problems.
>>> 
>>>                                                   Can you explain what
>>>                                                   is happening?
>>> 
>>>                                                   I ask because I'm
>>>                                                   not sure I
>>>                                                   understand the
>>>                                                   problem such that
>>>                                                   using RTLD_GLOBAL
>>>                                                   would fix it.  I.e.,
>>>                                                   even if libpmi1.so
>>>                                                   isn't linked against
>>>                                                   its dependencies
>>>                                                   properly, that
>>>                                                   shouldn't cause a
>>>                                                   problem if OMPI
>>>                                                   components A and B
>>>                                                   are both linked
>>>                                                   against libpmi1.so,
>>>                                                   and then A is
>>>                                                   loaded, and then B
>>>                                                   is loaded.
>>> 
>>>                                                   ...or perhaps we can
>>>                                                   just discuss this on
>>>                                                   the call tomorrow?
>>> 
>>>                                                   --
>>>                                                   Jeff Squyres
>>> 
>>>                                                   jsquy...@cisco.com
>>>                                                   
>>> <mailto:jsquy...@cisco.com>
>>>                                                   <mailto:jsquy...@cisco.com
>>>                                                   
>>> <mailto:jsquy...@cisco.com>>
>>> 
>>>                                                   For corporate legal
>>>                                                   information go to:
>>>                                                   
>>> http://www.cisco.com/web/__about/doing_business/legal/__cri/
>>>                                                   
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>>>                                                   
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>>>                   --
>>>                   С Уважением, Поляков Артем Юрьевич
>>>                   Best regards, Artem Y. Polyakov
>>>                   _________________________________________________
>>>                   devel mailing list
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>>>                   Subscription:
>>>                   http://www.open-mpi.org/__mailman/listinfo.cgi/devel
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>>>                   Link to this post:
>>>                   
>>> http://www.open-mpi.org/__community/lists/devel/2014/12/__16393.php
>>>                   
>>> <http://www.open-mpi.org/community/lists/devel/2014/12/16393.php>
>>> 
>>> 
>>> 
>>>               _________________________________________________
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>>>               
>>> http://www.open-mpi.org/__community/lists/devel/2014/12/__16395.php
>>>               
>>> <http://www.open-mpi.org/community/lists/devel/2014/12/16395.php>
>>> 
>>> 
>>> 
>>>               --
>>>               С Уважением, Поляков Артем Юрьевич
>>>               Best regards, Artem Y. Polyakov
>>>               _________________________________________________
>>>               devel mailing list
>>>               de...@open-mpi.org <mailto:de...@open-mpi.org>
>>>               Subscription:
>>>               http://www.open-mpi.org/__mailman/listinfo.cgi/devel
>>>               <http://www.open-mpi.org/mailman/listinfo.cgi/devel>
>>>               Link to this post:
>>>               
>>> http://www.open-mpi.org/__community/lists/devel/2014/12/__16396.php
>>>               
>>> <http://www.open-mpi.org/community/lists/devel/2014/12/16396.php>
>>> 
>>> 
>>> 
>>>           _________________________________________________
>>>           devel mailing list
>>>           de...@open-mpi.org <mailto:de...@open-mpi.org>
>>>           Subscription:
>>>           http://www.open-mpi.org/__mailman/listinfo.cgi/devel
>>>           <http://www.open-mpi.org/mailman/listinfo.cgi/devel>
>>>           Link to this post:
>>>           
>>> http://www.open-mpi.org/__community/lists/devel/2014/12/__16397.php
>>>           <http://www.open-mpi.org/community/lists/devel/2014/12/16397.php>
>>> 
>>> 
>>> 
>>>           --
>>>           С Уважением, Поляков Артем Юрьевич
>>>           Best regards, Artem Y. Polyakov
>>>           _________________________________________________
>>>           devel mailing list
>>>           de...@open-mpi.org <mailto:de...@open-mpi.org>
>>>           Subscription:
>>>           http://www.open-mpi.org/__mailman/listinfo.cgi/devel
>>>           <http://www.open-mpi.org/mailman/listinfo.cgi/devel>
>>>           Link to this post:
>>>           
>>> http://www.open-mpi.org/__community/lists/devel/2014/12/__16398.php
>>>           <http://www.open-mpi.org/community/lists/devel/2014/12/16398.php>
>>> 
>>> 
>>> 
>>> 
>>>   --
>>>   Edgar Gabriel
>>>   Associate Professor
>>>   Parallel Software Technologies Lab http://pstl.cs.uh.edu
>>>   Department of Computer Science          University of Houston
>>>   Philip G. Hoffman Hall, Room 524        Houston, TX-77204, USA
>>>   Tel: +1 (713) 743-3857                  Fax: +1 (713) 743-3335
>>>   _________________________________________________
>>>   devel mailing list
>>>   de...@open-mpi.org <mailto:de...@open-mpi.org>
>>>   Subscription: http://www.open-mpi.org/__mailman/listinfo.cgi/devel
>>>   <http://www.open-mpi.org/mailman/listinfo.cgi/devel>
>>>   Link to this post:
>>>   http://www.open-mpi.org/__community/lists/devel/2014/12/__16400.php
>>>   <http://www.open-mpi.org/community/lists/devel/2014/12/16400.php>
>>> 
>>> 
>>> 
>>> 
>>> --
>>> С Уважением, Поляков Артем Юрьевич
>>> Best regards, Artem Y. Polyakov
>>> 
>>> 
>>> _______________________________________________
>>> devel mailing list
>>> de...@open-mpi.org
>>> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/devel
>>> Link to this post: 
>>> http://www.open-mpi.org/community/lists/devel/2014/12/16404.php
>>> 
>> 
>> -- 
>> Edgar Gabriel
>> Associate Professor
>> Parallel Software Technologies Lab      http://pstl.cs.uh.edu
>> Department of Computer Science          University of Houston
>> Philip G. Hoffman Hall, Room 524        Houston, TX-77204, USA
>> Tel: +1 (713) 743-3857                  Fax: +1 (713) 743-3335
>> _______________________________________________
>> devel mailing list
>> de...@open-mpi.org
>> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/devel
>> Link to this post: 
>> http://www.open-mpi.org/community/lists/devel/2014/12/16405.php
> 
> 
> -- 
> Jeff Squyres
> jsquy...@cisco.com
> For corporate legal information go to: 
> http://www.cisco.com/web/about/doing_business/legal/cri/
> 


-- 
Jeff Squyres
jsquy...@cisco.com
For corporate legal information go to: 
http://www.cisco.com/web/about/doing_business/legal/cri/

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