This looks like a bug in the OMPI glue - let OMPI use its embedded PMIx version (which is the same anyway) as you don't need it to use the same as Slurm is using. You just need the separate PMIx installation to build the Slurm support.
> On Aug 5, 2020, at 8:10 AM, Luis Cebamanos via devel > <devel@lists.open-mpi.org> wrote: > > Hi Ralph, > > Thanks for pointing me to this. I've done that and although configure > does not report any errors, make won't build with following errors > > Making all in mca/pmix/ext3x > make[2]: Entering directory '/lustre/z04/openmpi-4.0.1/opal/mca/pmix/ext3x' > CC mca_pmix_ext3x_la-ext3x_local.lo > CC mca_pmix_ext3x_la-ext3x.lo > CC mca_pmix_ext3x_la-ext3x_client.lo > CC mca_pmix_ext3x_la-ext3x_component.lo > In file included from ext3x_local.c:21: > ext3x.h:35:10: fatal error: pmix_server.h: No such file or directory > #include "pmix_server.h" > ^~~~~~~~~~~~~~~ > > My configure options are as follow > > ./configure --prefix=/lustre/z04/ompi_slurm > --with-pmix=/lustre/z04/pmix --with-pmi=/lustre/z04/pmix --with-slurm > --with-cuda=/lustre/sw/nvidia/hpcsdk/Linux_x86_64/cuda/10.1/include/ > --with-libevent=/lustre/z04/pmix/libevent/ > > and I can see the that header file in the pmix built: > $ls /lustre/z04/pmix/include/ > pmi2.h pmix_common.h pmix.h pmix_server.h pmix_version.h > pmi.h pmix_extend.h pmix_rename.h pmix_tool.h > > What am I missing? > > Cheers, > Luis > On 05/08/2020 15:21, Ralph Castain via devel wrote: >> For OMPI, I would recommend installing PMIx: >> https://github.com/openpmix/openpmix/releases/tag/v3.1.5 >> >> >>> On Aug 5, 2020, at 12:40 AM, Luis Cebamanos via devel >>> <devel@lists.open-mpi.org> wrote: >>> >>> Hi all, >>> >>> We are trying to install OpenMPI with Slurm support on a recently >>> upgraded system. Unfortunately libpmi, libpmi2 or limpix don't seem to >>> be available. Could I install these libraries myself to build OpenMPI >>> and run it with Slurm? If so, which one would be needed? I guess these >>> libraries should have been installed and made available whith the Slurm >>> installation, but unfortunately they had not... >>> >>> checking for pmi.h... yes >>> checking for libpmi in /usr/include/slurm/lib... checking for libpmi in >>> /usr/include/slurm/lib64... not found >>> checking for pmi2.h in /usr/include/slurm... found >>> checking pmi2.h usability... yes >>> checking pmi2.h presence... yes >>> checking for pmi2.h... yes >>> checking for libpmi2 in /usr/include/slurm/lib... checking for libpmi2 >>> in /usr/include/slurm/lib64... not found >>> checking for pmix.h in /usr/include/slurm... not found >>> checking for pmix.h in /usr/include/slurm/include... not found >>> checking can PMI support be built... no >>> configure: WARNING: PMI support requested (via --with-pmi) but neither >>> pmi.h, >>> configure: WARNING: pmi2.h or pmix.h were found under locations: >>> configure: WARNING: /usr/include/slurm >>> configure: WARNING: /usr/include/slurm/slurm >>> configure: WARNING: Specified path: /usr/include/slurm >>> configure: WARNING: OR neither libpmi, libpmi2, or libpmix were found under: >>> configure: WARNING: /lib >>> configure: WARNING: /lib64 >>> >>> >>> Regards, >>> Luis >>> >>> The University of Edinburgh is a charitable body, registered in Scotland, >>> with registration number SC005336. >>> <pEpkey.asc> >> > > -- > ~~~~~~~~~~~~~~~~~~~~~~~~~ | EPCC | ~~~~~~~~~~~~~~~~~~~~~~~~~ > > Luis Cebamanos, HPC Applications Consultant > Email: l.cebama...@epcc.ed.ac.uk Phone: +44 (0) 131 651 3479 > > http://www.epcc.ed.ac.uk/ > The Bayes Centre, 47 Potterrow, Edinburgh UK > EH8 9BT > > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > > <pEpkey.asc>
