Hi all,
I've written it into more of a blog post format: https://medium.com/@c.martinez/software-carpentry-and-image-processing-5727d2347de2 Would everybody be ok for me to posting this on the eScience center blog (https://blog.esciencecenter.nl/)? And maybe cross posting on the carpentries blog ? Cheers, Carlos ________________________________ From: Tim McNamara <paperl...@timmcnamara.co.nz> Sent: 16 August 2018 01:39:57 To: discuss Subject: Re: [discuss] Image processing with Python Feel free to harvest the source of this file if anyone would like to publish something in a more visible location: https://git.nzoss.org.nz/tim-mcnamara/notebook/blob/master/image-processing-tutorials.md Tim McNamara https://tim.mcnamara.nz<https://tim.mcnamara.nz/> | @timClicks<http://twitter.com/timClicks> On 16 August 2018 at 11:04, Steven Haddock <hadd...@mbari.org<mailto:hadd...@mbari.org>> wrote: Maybe someone could collate this info into a blog post to preserve? -Steve > On Aug 15, 2018, at 12:16 , Pablo Hernandez via discuss > <discuss@lists.carpentries.org<mailto:discuss@lists.carpentries.org>> wrote: > > Hello all, such a good collection of resources! > > I would like to add the effort of the image analysis library Insight ToolKit > (ITK) to quickly create 3D visualizations in the web and/or with jupyter > notebooks. > > They are not in a lesson format, but it is promising! > > Here is a mybinder with all the dependencies installed: > > > https://mybinder.org/v2/gh/InsightSoftwareConsortium/itk-jupyter-widgets/master?filepath=examples%2F3DImage.ipynb > > > https://mybinder.org/v2/gh/InsightSoftwareConsortium/itk-jupyter-widgets/master?filepath=examples/SpecifyAColormap.ipynb > > > https://mybinder.org/v2/gh/InsightSoftwareConsortium/itk-jupyter-widgets/master?filepath=examples/SelectRegionOfInterest.ipynb > > Based on this repo: > https://github.com/InsightSoftwareConsortium/itk-jupyter-widgets > > There is also a course of Biomedical Image Analysis and Visualization: > https://github.com/KitwareMedical/2018-05-30-KRSCourseInBiomedicalImageAnalysisAndVisualization > > If the user is running the notebooks locally, instead of in mybinder, we just > need: > `pip install --user itkwidgets` > > Best regards, > Pablo > > > On Wed, Aug 15, 2018 at 12:59 PM, mbgoodman via discuss > <discuss@lists.carpentries.org<mailto:discuss@lists.carpentries.org>> wrote: > Hello all, > I am sorry I missed this thread in May. As Amy Hodge noted, we have been > developing image processing lessons at Stanford. The first iteration was > held in 2017 and was built by a team of Stanford grad students mentored by > Greg Wilson. We are in the midst of updating four lessons for the next > iteration, to be held in 2018. I need to check in with the current TA team > about updates, but initial github repo is here: > https://github.com/DataLucence/images > > I am digesting all of the other resources noted in this thread over the next > 6 weeks. > > -Miriam Goodman > > The Carpentries / discuss / see discussions + participants + delivery options > Permalink The Carpentries<https://carpentries.topicbox.com/latest> / discuss / see discussions<https://carpentries.topicbox.com/groups/discuss> + participants<https://carpentries.topicbox.com/groups/discuss/members> + delivery options<https://carpentries.topicbox.com/groups/discuss/subscription> Permalink<https://carpentries.topicbox.com/groups/discuss/T4240adcd25206bde-M4c8e0b7244e2da3401dd057c> ------------------------------------------ The Carpentries: discuss Permalink: https://carpentries.topicbox.com/groups/discuss/T4240adcd25206bde-M2cd685acaac87d8903595fae Delivery options: https://carpentries.topicbox.com/groups/discuss/subscription
