On Thursday 26 June 2008 16:49:41 Garth N. Wells wrote: > Johan Hake wrote: > > Hello! > > > > There have been reported some trubles with compiling trilinos. Especially > > version 8.0.5. I have now downloaded 8.0.7 and compiled this without > > problems, on Ubuntu Hardy. > > > > Both with and without mpi. > > > > Compile flags for MPI: > > ../configure --prefix=<install_dir> --enable-shared --enable-pytrilinos\ > > --enable-pliris --enable-didasko --enable-amesos --enable-anasazi\ > > --enable-default-packages --enable-galeri --with-cflags=-fPIC\ > > --with-cxxflags=-fPIC --with-fflags=-fPIC --with-ldflags=-fPIC\ > > --with-ccflags=-fPIC --enable-triutils --enable-aztecoo-teuchos\ > > --enable-mpi --with-mpi-compilers --with-gnumake -C > > Unfortunately this didn't work for me. I get a bunch of errors.
To bad! I remembered that I had some problems with the Teuchos package. It is unfortunately almost impossible to debug the swig generated wrapper code. I used the swig version that comes with hardy, i.e., 1.3.33 and for the MPI version I used the updated openmpi package that comes with hardy. Johan > Garth > > Teuchos_wrap.o: In function `typecode_string(int)': > /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src >/Teuchos_wrap.cpp:3124: multiple definition of `typecode_string(int)' > Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos >/shared/../src/Epetra_wrap.cpp:3877: first defined here > Teuchos_wrap.o: In function `type_match(int, int)': > /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src >/Teuchos_wrap.cpp:3141: multiple definition of `type_match(int, int)' > Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos >/shared/../src/Epetra_wrap.cpp:3894: first defined here > Teuchos_wrap.o: In function `SWIG_TypePrettyName': > /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src >/Teuchos_wrap.cpp:486: multiple definition of `PyTrilinos' > Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos >/shared/../src/Epetra_wrap.cpp:487: first defined here > Teuchos_wrap.o: In function `make_contiguous(PyArrayObject*, int*, int, > int)': > /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src >/Teuchos_wrap.cpp:3211: multiple definition of > `make_contiguous(PyArrayObject*, int*, int, int)' > Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos >/shared/../src/Epetra_wrap.cpp:3964: first defined here > Teuchos_wrap.o: In function `require_native(PyArrayObject*)': > /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src >/Teuchos_wrap.cpp:3278: multiple definition of > `require_native(PyArrayObject*)' > Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos >/shared/../src/Epetra_wrap.cpp:4031: first defined here > Teuchos_wrap.o: In function `require_contiguous(PyArrayObject*)': > /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src >/Teuchos_wrap.cpp:3262: multiple definition of > `require_contiguous(PyArrayObject*)' > Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos >/shared/../src/Epetra_wrap.cpp:4015: first defined here > Teuchos_wrap.o: In function `require_dimensions(PyArrayObject*, int)': > /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src >/Teuchos_wrap.cpp:3295: multiple definition of > `require_dimensions(PyArrayObject*, int)' > Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos >/shared/../src/Epetra_wrap.cpp:4048: first defined here > Teuchos_wrap.o: In function `obj_to_array_allow_conversion(_object*, > int, int*)': > /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src >/Teuchos_wrap.cpp:3185: multiple definition of > `obj_to_array_allow_conversion(_object*, int, int*)' > Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos >/shared/../src/Epetra_wrap.cpp:3938: first defined here > Teuchos_wrap.o: In function > `obj_to_array_contiguous_allow_conversion(_object*, int, int*)': > /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src >/Teuchos_wrap.cpp:3237: multiple definition of > `obj_to_array_contiguous_allow_conversion(_object*, int, int*)' > Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos >/shared/../src/Epetra_wrap.cpp:3990: first defined here > Teuchos_wrap.o: In function `Finalize()': > /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src >/Teuchos_wrap.cpp:4341: multiple definition of `Finalize()' > Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos >/shared/../src/Epetra_wrap.cpp:4764: first defined here > Teuchos_wrap.o: In function `Init_Argv(_object*)': > /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src >/Teuchos_wrap.cpp:4298: multiple definition of `Init_Argv(_object*)' > Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos >/shared/../src/Epetra_wrap.cpp:4721: first defined here > Teuchos_wrap.o: In function `require_size(PyArrayObject*, int*, int)': > /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src >/Teuchos_wrap.cpp:3346: multiple definition of `require_size(PyArrayObject*, > int*, int)' > Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos >/shared/../src/Epetra_wrap.cpp:4099: first defined here > Teuchos_wrap.o: In function `require_dimensions_n(PyArrayObject*, int*, > int)': > /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src >/Teuchos_wrap.cpp:3313: multiple definition of > `require_dimensions_n(PyArrayObject*, int*, int)' > Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos >/shared/../src/Epetra_wrap.cpp:4066: first defined here > Teuchos_wrap.o: In function `pytype_string(_object*)': > /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src >/Teuchos_wrap.cpp:3105: multiple definition of `pytype_string(_object*)' > Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos >/shared/../src/Epetra_wrap.cpp:3858: first defined here > Teuchos_wrap.o: In function `obj_to_array_no_conversion(_object*, int)': > /home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos/shared/../src >/Teuchos_wrap.cpp:3150: multiple definition of > `obj_to_array_no_conversion(_object*, int)' > Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/PyTrilinos >/shared/../src/Epetra_wrap.cpp:3903: first defined here > Teuchos_wrap.o: In function `SWIG_TypePrettyName': > /usr/local/include/openmpi/ompi/mpi/cxx/win_inln.h:118: multiple > definition of `NumPyImporter::m_singleton' > Epetra_wrap.o:/home/garth/code/libraries/trilinos-8.0.7/packages/epetra/src >/Epetra_Util.h:179: first defined here > collect2: ld returned 1 exit status > Traceback (most recent call last): > File "./setup.py", line 172, in <module> > ################### > File "./setup.py", line 148, in main > # Build the init file > File "../util/SharedUtils.py", line 475, in buildShared > SharedTrilinosBuilder.buildShared(self) > File "../util/SharedUtils.py", line 330, in buildShared > runCommand(self.linkCmd) > File "../util/SharedUtils.py", line 97, in runCommand > if status: raise RuntimeError, "Exit status = %d" % status > RuntimeError: Exit status = 256 > > > Compile flags for serial: > > ../configure --prefix=<install_dir> --enable-shared --enable-pytrilinos\ > > --enable-pliris --enable-didasko --enable-amesos --enable-anasazi\ > > --enable-default-packages --enable-galeri --with-cflags=-fPIC\ > > --with-cxxflags=-fPIC --with-fflags=-fPIC --with-ldflags=-fPIC\ > > --with-ccflags=-fPIC --enable-triutils --enable-aztecoo-teuchos\ > > --with-gnumake -C > > > > Have fun! > > > > Johan > > _______________________________________________ > > DOLFIN-dev mailing list > > [email protected] > > http://www.fenics.org/mailman/listinfo/dolfin-dev 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