I discovered the solution to my indexing problem. To recap what happened: when 
I ran the dspace filter-media script it would crash after a while and complain 
about too many files being open. To fix that I edited the 
/etc/security/limits.conf file and added the following lines:
 
* hard nofile 65536
* soft nofile 65536
 
But the script still kept crashing.  Finally I discovered that the * wildcard 
does not apply to the root user, and I often login to our dspace server with my 
own username and run dspace scripts using sudo instead of doing things the 
proper way and running the scripts as the dspace user. By running the script as 
root, the new file limits did not apply.
 
Lesson learned, and I hope this message helps someone else in the future.
 
-Joshua
 
 
Joshua Gomez
Digital Library Programmer Analyst
Gelman Library
George Washington University
(202) 994-8267
jngo...@library.gwu.edu 

>>> Andrea Schweer <schw...@waikato.ac.nz> 7/21/2011 5:29 PM >>>
Hi Joshua,

On 22/07/11 02:20, Joshua Gomez wrote:
> Andrea, yes that worked. thanks. Of course I believe it has nothing
> to do with my original indexing problem, but at least I'm removing 
> possibilities.

Good to hear it works and thanks for confirming -- I'll update the wiki
page.

So you're still getting your "too many open files" error with the Sun
JDK? The original error message you posted very much looked like a JDK
problem.

If you suspect it's actually related to Tomcat's memory settings, you
could try increasing its memory. There are some hints here:
https://wiki.duraspace.org/display/DSPACE/HowToPerformanceTuneForDspace.
You'd change JAVA_OPTS in /etc/default/tomcat6.

cheers,
Andrea

-- 
Andrea Schweer
IRR Technical Specialist, ITS Information Systems
The University of Waikato, Hamilton, New Zealand

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