It seems it is a bug.

Here is a work-around.

Import the second file into a new temporary DX4Win file then merge it 
into the main log. I was able to import all QSOs without duplicate messages.

It seems there may be a problem when there are QSOs very close together. 
For example, you worked DK2FE twice within 2 minutes.

Here is

Kostas Stamatis wrote:
> here the 2 adif files
> 
> ----- Original Message ----- From: "Mel" <ve...@videotron.ca>
> To: "Kostas Stamatis" <sv1...@otenet.gr>
> Cc: "REFLECTOR dx4win" <dx4win@mailman.qth.net>
> Sent: Monday, August 10, 2009 8:58 PM
> Subject: Re: [Dx4win] Multiple ADIF import
> 
> 
>> If we ignore the groups for a moment... I don't understand how you 
>> would have duplicates. Are you sure you have not loaded some data 
>> twice? I'm not sure the group issue is relevant. If you send me the 2 
>> ADIF files I can try and see what happens here...
>>
>> Kostas Stamatis wrote:
>>> yes imporing 2 different adif in 2 different groups. No these are not 
>>> he same ofcourse. the 2 adifs are different.
>>>
>>> ----- Original Message ----- From: "Mel" <ve...@videotron.ca>
>>> To: "Kostas Stamatis" <sv1...@otenet.gr>
>>> Cc: "REFLECTOR dx4win" <dx4win@mailman.qth.net>
>>> Sent: Monday, August 10, 2009 8:44 PM
>>> Subject: Re: [Dx4win] Multiple ADIF import
>>>
>>>
>>>> Importing from what Kostas? ADIF files? Are the duplicates actually 
>>>> same date/time/mode ? Yes Paul is aware of the , vs . issue.
>>>>
>>>> Kostas Stamatis wrote:
>>>>> I was in a small expedition to eu113 during iota contest where we 
>>>>> worked mainly like sx8z. Before the contest we worked like 
>>>>> sv1dpi/8, sv1dpj/8, sv1cib/8. As i am the manager for all i keep 
>>>>> the whole log. I tried to import logs to dx4win 801. I made groups 
>>>>> like 0=sx8z, 1=sv1dpj/8, 2=sv1cib/8 and 3=sv1dpi/8. Then i imported 
>>>>> the first one. all ok. I changeg in preferences the default group 
>>>>> number to 1 and imported the second one. dx4win gave me an error 
>>>>> for duplicate qsos. i tried hard for all possible combinations with 
>>>>> no result. I went back to 707 and import is ok. 801 reads now my 
>>>>> log. I think somewhere is a problem. Can anyone confirm this bug?
>>>>> I had a problem with labels also yesterday when dx4win counted 
>>>>> printed qsos in preview without stop but i couldn't reproduce the 
>>>>> problem even i have tried it many times the same. It worked ok 
>>>>> after this.
>>>>> I had problems also with f8 as i was trying to search for all qsos 
>>>>> of a group number with no result but i think this is a known 
>>>>> problem for Europenas because of the difference in frequency point 
>>>>> and comma.
>>>>> 73 Kostas sv1dpi
>>>>>
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