Dear Sona,
As the warning describes, you shouldn't have any software modules loaded
when building software with EasyBuild.
It may explain the problem you are seeing.
Please try running 'eb' again after unloaded the modules, using 'module
purge'.
regards,
Kenneth
On 11/03/2019 06:02, Ms. Sona CP wrote:
Hi,
While installing iimpi file, we are getting an error with binutils
showing module already loaded. Many more software installation like
intel/2018a , Python 3.6.4 etc showed same error. It is showing a
linking error with zlib file. How to resolve this error.
Following are the log file contents got from iimpi installation
temporary log file in case of crash
/tmp/jobs/snow/6234/eb-SX6mFh/easybuild-vCIfI1.log
WARNING: Found one or more non-allowed loaded (EasyBuild-generated)
modules in current environment:
* GCCcore/5.4.0
* GCCcore/5.4.0
* binutils/2.26-GCCcore-5.4.0
* numactl/2.0.11-GCC-5.4.0-2.26
* hwloc/1.11.3-GCC-5.4.0-2.26
* OpenMPI/1.10.3-GCC-5.4.0-2.26
* OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1
* gompi/2016b
* FFTW/3.3.4-gompi-2016b
* ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1
* foss/2016b
* zlib/1.2.11-foss-2016b
This is not recommended since it may affect the installation
procedure(s) performed by EasyBuild.
To make EasyBuild allow particular loaded modules, use the
--allow-loaded-modules configuration option.
To specify action to take when loaded modules are detected, use
--detect-loaded-modules={error,ignore,purge,unload,warn}.
See
http://easybuild.readthedocs.io/en/latest/Detecting_loaded_modules.html
for more information.
== resolving dependencies ...
== processing EasyBuild easyconfig
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.0-py2.7.egg/easybuild/easyconfigs/b/binutils/binutils-2.28.eb
== building and installing binutils/2.28...
== fetching files...
== creating build dir, resetting environment...
== FAILED: Installation ended unsuccessfully (build directory:
/sNow/easybuild/centos/7.3.1611/Broadwell/build/binutils/2.28/dummy-):
build failed (first 300 chars): Module is already loaded (EBROOTBINUTILS
is set), installation cannot continue.
== Results of the build can be found in the log file(s)
/sNow/easybuild/tmp/easybuild-binutils-2.28-20190311.004052.fAtBQ.log
ERROR: Build of
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.0-py2.7.egg/easybuild/easyconfigs/b/binutils/binutils-2.28.eb
failed (err: 'build failed (first 300 chars): Module is already loaded
(EBROOTBINUTILS is set), installation cannot continue.')
snow@sny02:/sNow/easybuild/software/EasyBuild/3.2.1/lib/python2.7/site-packages/easybuild_easyconfigs-3.2.1-py2.7.egg/easybuild/easyconfigs/i/
iimpi$ cat
/sNow/easybuild/tmp/easybuild-binutils-2.28-20190311.004052.fAtBQ.log
== 2019-03-11 00:40:52,830 easyblock.py:264 INFO This is EasyBuild 3.5.0
(framework: 3.5.0, easyblocks: 3.5.0) on host
sny02.sunya.rajagiritech.edu.in <http://sny02.sunya.rajagiritech.edu.in>.
== 2019-03-11 00:40:52,830 easyblock.py:270 INFO This is easyblock
EB_binutils from module easybuild.easyblocks.binutils
(/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyblocks-3.5.0-py2.7.egg/easybuild/easyblocks/b/binutils.pyo)
== 2019-03-11 00:40:52,831 easyblock.py:815 INFO Build dir set to
/sNow/easybuild/centos/7.3.1611/Broadwell/build/binutils/2.28/dummy-
== 2019-03-11 00:40:52,831 config.py:460 DEBUG software install path as
specified by 'installpath' and 'subdir_software':
/sNow/easybuild/centos/7.3.1611/Broadwell/software
== 2019-03-11 00:40:52,831 easyconfig.py:1688 DEBUG Determining software
installation subdir for
<easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2932210>
== 2019-03-11 00:40:52,831 easyconfig.py:1694 DEBUG Obtained subdir
binutils/2.28
== 2019-03-11 00:40:52,831 easyblock.py:856 INFO Software install dir
set to /sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.28
== 2019-03-11 00:40:52,831 config.py:460 DEBUG modules install path as
specified by 'installpath' and 'subdir_modules':
/sNow/easybuild/centos/7.3.1611/Broadwell/modules
== 2019-03-11 00:40:52,831 easyblock.py:861 INFO Module install dir set
to /sNow/easybuild/centos/7.3.1611/Broadwell/modules/all
== 2019-03-11 00:40:52,831 easyblock.py:249 INFO Init completed for
application name binutils version 2.28
== 2019-03-11 00:40:52,831 easyblock.py:2659 INFO Obtained application
instance of for binutils (easyblock: None)
== 2019-03-11 00:40:52,831 easyblock.py:2672 DEBUG Skip set to False
== 2019-03-11 00:40:52,832 build_log.py:233 INFO building and installing
binutils/2.28...
== 2019-03-11 00:40:52,832 easyblock.py:2438 DEBUG Not skipping fetch
step (skippable: False, skip: None, skipsteps: [], module_only: False,
force: False
== 2019-03-11 00:40:52,832 build_log.py:233 INFO fetching files...
== 2019-03-11 00:40:52,832 easyblock.py:2446 INFO Starting fetch step
== 2019-03-11 00:40:52,832 templates.py:151 DEBUG config:
<easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2932210>
== 2019-03-11 00:40:52,832 templates.py:175 DEBUG version found in
easyconfig is 2.28
== 2019-03-11 00:40:52,832 templates.py:219 DEBUG name: github_account,
config: None
== 2019-03-11 00:40:52,832 templates.py:219 DEBUG name: name, config:
binutils
== 2019-03-11 00:40:52,832 templates.py:219 DEBUG name: version, config:
2.28
== 2019-03-11 00:40:52,833 templates.py:219 DEBUG name: versionsuffix,
config:
== 2019-03-11 00:40:52,833 templates.py:219 DEBUG name: versionprefix,
config:
== 2019-03-11 00:40:52,833 templates.py:151 DEBUG config:
<easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2932210>
== 2019-03-11 00:40:52,833 templates.py:175 DEBUG version found in
easyconfig is 2.28
== 2019-03-11 00:40:52,833 templates.py:219 DEBUG name: github_account,
config: None
== 2019-03-11 00:40:52,833 templates.py:219 DEBUG name: name, config:
binutils
== 2019-03-11 00:40:52,833 templates.py:219 DEBUG name: version, config:
2.28
== 2019-03-11 00:40:52,833 templates.py:219 DEBUG name: versionsuffix,
config:
== 2019-03-11 00:40:52,833 templates.py:219 DEBUG name: versionprefix,
config:
== 2019-03-11 00:40:52,833 easyblock.py:2452 INFO Running method
fetch_step part of step fetch
== 2019-03-11 00:40:52,834 easyblock.py:1557 WARNING Easyconfig does not
specify an EasyBuild-version (key 'easybuild_version')! Assuming the
latest version
== 2019-03-11 00:40:52,834 filetools.py:343 INFO Command eb found at
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/bin/eb
== 2019-03-11 00:40:52,834 tools.py:263 DEBUG Also considering
installation prefix
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0.
<http://3.5.0.>..
== 2019-03-11 00:40:52,834 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.0-py2.7.egg/easybuild/easyconfigs/easybuild/easyconfigs
== 2019-03-11 00:40:52,834 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at easybuild/easyconfigs
== 2019-03-11 00:40:52,834 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/vsc_install-0.10.26-py2.7.egg/easybuild/easyconfigs
== 2019-03-11 00:40:52,835 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/vsc_base-2.5.8-py2.7.egg/easybuild/easyconfigs
== 2019-03-11 00:40:52,835 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_framework-3.5.0-py2.7.egg/easybuild/easyconfigs
== 2019-03-11 00:40:52,835 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyblocks-3.5.0-py2.7.egg/easybuild/easyconfigs
== 2019-03-11 00:40:52,835 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.0-py2.7.egg/easybuild/easyconfigs
== 2019-03-11 00:40:52,835 tools.py:272 DEBUG Added
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.0-py2.7.egg/easybuild/easyconfigs
to list of paths for easybuild/easyconfigs
== 2019-03-11 00:40:52,835 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild/easyconfigs
== 2019-03-11 00:40:52,836 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at
/sNow/easybuild/installation/lib/python2.7/site-packages/easybuild/easyconfigs
== 2019-03-11 00:40:52,836 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at
/sNow/easybuild/software/EasyBuild/3.2.1/lib/python2.7/site-packages/easybuild_easyconfigs-3.2.1-py2.7.egg/easybuild/easyconfigs/i/iimpi/easybuild/easyconfigs
== 2019-03-11 00:40:52,836 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at /usr/lib64/python27.zip/easybuild/easyconfigs
== 2019-03-11 00:40:52,836 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at /usr/lib64/python2.7/easybuild/easyconfigs
== 2019-03-11 00:40:52,836 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at
/usr/lib64/python2.7/plat-linux2/easybuild/easyconfigs
== 2019-03-11 00:40:52,836 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at /usr/lib64/python2.7/lib-tk/easybuild/easyconfigs
== 2019-03-11 00:40:52,836 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at /usr/lib64/python2.7/lib-old/easybuild/easyconfigs
== 2019-03-11 00:40:52,837 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at
/usr/lib64/python2.7/lib-dynload/easybuild/easyconfigs
== 2019-03-11 00:40:52,837 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at
/usr/lib64/python2.7/site-packages/easybuild/easyconfigs
== 2019-03-11 00:40:52,837 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at
/usr/lib/python2.7/site-packages/easybuild/easyconfigs
== 2019-03-11 00:40:52,838 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at
/sNow/easybuild/installation/lib/python2.7/site-packages/easybuild/easyconfigs
== 2019-03-11 00:40:52,838 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/easybuild/easyconfigs
== 2019-03-11 00:40:52,839 easyblock.py:646 INFO Found file
binutils-2.28.tar.gz at
/sNow/easybuild/sources/b/binutils/binutils-2.28.tar.gz
== 2019-03-11 00:40:52,839 easyblock.py:362 DEBUG File
/sNow/easybuild/sources/b/binutils/binutils-2.28.tar.gz found for source
binutils-2.28.tar.gz
== 2019-03-11 00:40:52,839 easyblock.py:374 INFO Added sources:
[{'path': '/sNow/easybuild/sources/b/binutils/binutils-2.28.tar.gz',
'cmd': None, 'finalpath':
'/sNow/easybuild/centos/7.3.1611/Broadwell/build/binutils/2.28/dummy-',
'name': 'binutils-2.28.tar.gz', 'checksum':
'cd717966fc761d840d451dbd58d44e1e5b92949d2073d75b73fccb476d772fcf'}]
== 2019-03-11 00:40:52,839 easyblock.py:1598 INFO no patches provided
== 2019-03-11 00:40:52,839 filetools.py:652 DEBUG Using blocksize
16777216 for calculating the checksum
== 2019-03-11 00:40:52,925 easyblock.py:1608 INFO md5 checksum for
/sNow/easybuild/sources/b/binutils/binutils-2.28.tar.gz:
d5d270fd0b698ed59ca5ade8e1b5059c
== 2019-03-11 00:40:52,925 filetools.py:652 DEBUG Using blocksize
16777216 for calculating the checksum
== 2019-03-11 00:40:53,059 easyblock.py:1608 INFO sha256 checksum for
/sNow/easybuild/sources/b/binutils/binutils-2.28.tar.gz:
cd717966fc761d840d451dbd58d44e1e5b92949d2073d75b73fccb476d772fcf
== 2019-03-11 00:40:53,060 easyconfig.py:1676 DEBUG Determining full
module name for <easybuild.framework.easyconfig.easyconfig.EasyConfig
object at 0x2932210> (force_visible: False)
== 2019-03-11 00:40:53,060 easyconfig.py:1656 DEBUG No alternative
software name specified to determine module name with
== 2019-03-11 00:40:53,060 utilities.py:103 DEBUG Module name
binutils/2.28 validated
== 2019-03-11 00:40:53,060 easyconfig.py:1683 DEBUG Obtained valid full
module name binutils/2.28
== 2019-03-11 00:40:53,060 config.py:460 DEBUG modules install path as
specified by 'installpath' and 'subdir_modules':
/sNow/easybuild/centos/7.3.1611/Broadwell/modules
== 2019-03-11 00:40:53,060 easyblock.py:1641 INFO Checking dirs that
need to be created:
['/sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.28',
'/sNow/easybuild/centos/7.3.1611/Broadwell/modules/all/binutils',
'/sNow/easybuild/centos/7.3.1611/Broadwell/modules/tools/binutils']
== 2019-03-11 00:40:53,061 filetools.py:1135 DEBUG Not creating existing
path /sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.28
== 2019-03-11 00:40:53,061 filetools.py:1135 DEBUG Not creating existing
path /sNow/easybuild/centos/7.3.1611/Broadwell/modules/all/binutils
== 2019-03-11 00:40:53,061 filetools.py:1135 DEBUG Not creating existing
path /sNow/easybuild/centos/7.3.1611/Broadwell/modules/tools/binutils
== 2019-03-11 00:40:53,061 easyblock.py:2438 DEBUG Not skipping ready
step (skippable: False, skip: None, skipsteps: [], module_only: False,
force: False
== 2019-03-11 00:40:53,062 build_log.py:233 INFO creating build dir,
resetting environment...
== 2019-03-11 00:40:53,062 easyblock.py:2446 INFO Starting ready step
== 2019-03-11 00:40:53,062 templates.py:151 DEBUG config:
<easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2932210>
== 2019-03-11 00:40:53,062 templates.py:175 DEBUG version found in
easyconfig is 2.28
== 2019-03-11 00:40:53,062 templates.py:219 DEBUG name: github_account,
config: None
== 2019-03-11 00:40:53,062 templates.py:219 DEBUG name: name, config:
binutils
== 2019-03-11 00:40:53,062 templates.py:219 DEBUG name: version, config:
2.28
== 2019-03-11 00:40:53,062 templates.py:219 DEBUG name: versionsuffix,
config:
== 2019-03-11 00:40:53,062 templates.py:219 DEBUG name: versionprefix,
config:
== 2019-03-11 00:40:53,062 templates.py:151 DEBUG config:
<easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2932210>
== 2019-03-11 00:40:53,063 templates.py:175 DEBUG version found in
easyconfig is 2.28
== 2019-03-11 00:40:53,063 templates.py:219 DEBUG name: github_account,
config: None
== 2019-03-11 00:40:53,063 templates.py:219 DEBUG name: name, config:
binutils
== 2019-03-11 00:40:53,063 templates.py:219 DEBUG name: version, config:
2.28
== 2019-03-11 00:40:53,063 templates.py:219 DEBUG name: versionsuffix,
config:
== 2019-03-11 00:40:53,063 templates.py:219 DEBUG name: versionprefix,
config:
== 2019-03-11 00:40:53,063 easyblock.py:2452 INFO Running method
check_readiness_step part of step ready
== 2019-03-11 00:40:53,063 easyblock.py:1502 DEBUG Desired parallelism
specified via 'parallel' build option: None
== 2019-03-11 00:40:53,064 affinity.py:211 DEBUG sched_getaffinity for
pid 10580 returned cpuset 0
== 2019-03-11 00:40:53,064 run.py:163 DEBUG run_cmd: running cmd ulimit
-u (in
/sNow/easybuild/software/EasyBuild/3.2.1/lib/python2.7/site-packages/easybuild_easyconfigs-3.2.1-py2.7.egg/easybuild/easyconfigs/i/iimpi)
== 2019-03-11 00:40:53,064 run.py:183 INFO running cmd: ulimit -u
== 2019-03-11 00:40:53,092 run.py:488 DEBUG cmd "ulimit -u" exited with
exit code 0 and output:
515142
== 2019-03-11 00:40:53,092 run.py:522 DEBUG Using default regular
expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2019-03-11 00:40:53,092 easyblock.py:1505 INFO Setting parallelism: 1
== 2019-03-11 00:40:53,092 modules.py:641 DEBUG Current MODULEPATH:
/sNow/easybuild/centos/7.3.1611/Broadwell/modules/all:/sNow/easybuild/modules/all:/sNow/easybuild/modulefiles/Linux:/sNow/easybuild/modulefiles/Core:/sNow/easybuild/lmod/lmod/modulefiles/Core
== 2019-03-11 00:40:53,093 modules.py:648 DEBUG Changing LD_LIBRARY_PATH
from
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/zlib/1.2.11-foss-2016b/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/FFTW/3.3.4-gompi-2016b/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenMPI/1.10.3-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/hwloc/1.11.3-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/numactl/2.0.11-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.26-GCCcore-5.4.0/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib/gcc/x86_64-unknown-linux-gnu/5.4.0:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib64:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib'
to
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/zlib/1.2.11-foss-2016b/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/FFTW/3.3.4-gompi-2016b/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenMPI/1.10.3-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/hwloc/1.11.3-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/numactl/2.0.11-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.26-GCCcore-5.4.0/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib/gcc/x86_64-unknown-linux-gnu/5.4.0:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib64:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib'
in environment for module command
== 2019-03-11 00:40:53,093 modules.py:648 DEBUG Changing LD_PRELOAD from
'' to '' in environment for module command
== 2019-03-11 00:40:53,093 modules.py:652 DEBUG Running module command
'/sNow/easybuild/lmod/lmod/libexec/lmod python --terse list' from
/sNow/easybuild/software/EasyBuild/3.2.1/lib/python2.7/site-packages/easybuild_easyconfigs-3.2.1-py2.7.egg/easybuild/easyconfigs/i/iimpi
== 2019-03-11 00:40:53,144 modules.py:658 DEBUG Output of module command
'/sNow/easybuild/lmod/lmod/libexec/lmod python --terse list': stdout:
os.environ["MODULEPATH"] =
"/sNow/easybuild/centos/7.3.1611/Broadwell/modules/all:/sNow/easybuild/modules/all:/sNow/easybuild/modulefiles/Linux:/sNow/easybuild/modulefiles/Core:/sNow/easybuild/lmod/lmod/modulefiles/Core";
os.environ["_ModuleTable001_"] =
"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";
os.environ["_ModuleTable002_"] =
"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";
os.environ["_ModuleTable003_"] =
"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";
os.environ["_ModuleTable004_"] =
"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";
os.environ["_ModuleTable005_"] =
"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";
os.environ["_ModuleTable006_"] =
"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";
os.environ["_ModuleTable007_"] =
"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";
os.environ["_ModuleTable008_"] =
"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";
os.environ["_ModuleTable009_"] =
"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";
os.environ["_ModuleTable010_"] =
"Tm93L2Vhc3lidWlsZC9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==";
os.environ["_ModuleTable_Sz_"] = "10";
; stderr: EasyBuild/3.5.0
GCCcore/5.4.0
binutils/2.26-GCCcore-5.4.0
GCC/5.4.0-2.26
numactl/2.0.11-GCC-5.4.0-2.26
hwloc/1.11.3-GCC-5.4.0-2.26
OpenMPI/1.10.3-GCC-5.4.0-2.26
OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1
gompi/2016b
FFTW/3.3.4-gompi-2016b
ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1
foss/2016b
zlib/1.2.11-foss-2016b
== 2019-03-11 00:40:53,144 modules.py:1109 DEBUG Output found in stdout,
seems like '/sNow/easybuild/lmod/lmod/libexec/lmod python --terse list'
ran fine
== 2019-03-11 00:40:53,144 modules.py:695 DEBUG Correcting paths in
$LD_LIBRARY_PATH from
['/sNow/easybuild/centos/7.3.1611/Broadwell/software/zlib/1.2.11-foss-2016b/lib',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1/lib',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/FFTW/3.3.4-gompi-2016b/lib',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1/lib',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenMPI/1.10.3-GCC-5.4.0-2.26/lib',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/hwloc/1.11.3-GCC-5.4.0-2.26/lib',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/numactl/2.0.11-GCC-5.4.0-2.26/lib',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.26-GCCcore-5.4.0/lib',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib/gcc/x86_64-unknown-linux-gnu/5.4.0',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib64', '/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib']
to
['/sNow/easybuild/centos/7.3.1611/Broadwell/software/zlib/1.2.11-foss-2016b/lib',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1/lib',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/FFTW/3.3.4-gompi-2016b/lib',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1/lib',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenMPI/1.10.3-GCC-5.4.0-2.26/lib',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/hwloc/1.11.3-GCC-5.4.0-2.26/lib',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/numactl/2.0.11-GCC-5.4.0-2.26/lib',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.26-GCCcore-5.4.0/lib',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib/gcc/x86_64-unknown-linux-gnu/5.4.0',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib64', '/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib']
== 2019-03-11 00:40:53,145 environment.py:97 INFO Environment variable
LD_LIBRARY_PATH set to
/sNow/easybuild/centos/7.3.1611/Broadwell/software/zlib/1.2.11-foss-2016b/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/FFTW/3.3.4-gompi-2016b/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenMPI/1.10.3-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/hwloc/1.11.3-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/numactl/2.0.11-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.26-GCCcore-5.4.0/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib/gcc/x86_64-unknown-linux-gnu/5.4.0:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib64:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib
(previous value:
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/zlib/1.2.11-foss-2016b/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/FFTW/3.3.4-gompi-2016b/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenMPI/1.10.3-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/hwloc/1.11.3-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/numactl/2.0.11-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.26-GCCcore-5.4.0/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib/gcc/x86_64-unknown-linux-gnu/5.4.0:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib64:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib')
== 2019-03-11 00:40:53,145 modules.py:695 DEBUG Correcting paths in
$LD_PRELOAD from [''] to []
== 2019-03-11 00:40:53,145 environment.py:97 INFO Environment variable
LD_PRELOAD set to (previous value: '')
== 2019-03-11 00:40:53,145 easyblock.py:1510 WARNING Loaded modules
detected: ['EasyBuild/3.5.0', 'GCCcore/5.4.0',
'binutils/2.26-GCCcore-5.4.0', 'GCC/5.4.0-2.26',
'numactl/2.0.11-GCC-5.4.0-2.26', 'hwloc/1.11.3-GCC-5.4.0-2.26',
'OpenMPI/1.10.3-GCC-5.4.0-2.26',
'OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1', 'gompi/2016b',
'FFTW/3.3.4-gompi-2016b',
'ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1',
'foss/2016b', 'zlib/1.2.11-foss-2016b']
== 2019-03-11 00:40:53,145 utilities.py:101 DEBUG Skipping importing of
toolchain modules, processing of toolchain constants is already done.
== 2019-03-11 00:40:53,146 systemtools.py:211 DEBUG Determined CPU
architecture: x86_64
== 2019-03-11 00:40:53,146 systemtools.py:211 DEBUG Determined CPU
architecture: x86_64
== 2019-03-11 00:40:53,146 systemtools.py:247 DEBUG Determined CPU
vendor on Linux as being 'Intel' via regex 'vendor_id\s+:\s*(\S+)' in
/proc/cpuinfo
== 2019-03-11 00:40:53,146 systemtools.py:273 DEBUG Using vendor as CPU
family: Intel
== 2019-03-11 00:40:53,147 utilities.py:140 DEBUG Obtained new toolchain
instance for ('dummy', ''): {'dummy': True, 'versionsuffix': '',
'version': '', 'toolchain': {'version': 'dummy', 'name': 'dummy'},
'name': 'dummy', 'full_mod_name': None, 'hidden': False, 'parsed': True,
'short_mod_name': None}
== 2019-03-11 00:40:53,147 options.py:64 DEBUG Using toolchain options
{'precise': (False, 'High precision'), 'verbose': (False, 'Verbose
output'), 'rpath': (True, 'Use RPATH wrappers when --rpath is enabled in
EasyBuild configuration'), 'pic': (False, 'Use PIC'), 'static': (False,
'Build static library'), 'optarch': (True, 'Enable architecture
optimizations'), 'ieee': (False, 'Adhere to IEEE-754 rules'),
'veryloose': (False, 'Very loose precision'), 'strict': (False, 'Strict
(highest) precision'), 'unroll': (False, 'Unroll loops'), 'lowopt':
(False, 'Low compiler optimizations'), 'shared': (False, 'Build shared
library'), 'opt': (False, 'High compiler optimizations'), 'i8': (False,
'Integers are 8 byte integers'), 'loose': (False, 'Loose precision'),
'cstd': (None, 'Specify C standard'), 'defaultprec': (False, 'Default
precision'), 'openmp': (False, 'Enable OpenMP'), 'noopt': (False,
'Disable compiler optimizations'), 'packed-linker-options': (False,
'Pack the linker options as comma separated list'), 'r8': (False, 'Real
is 8 byte real'), 'cciscxx': (False, 'Use CC as CXX'), '32bit': (False,
'Compile 32bit target'), 'debug': (False, 'Enable debug'), 'defaultopt':
(False, 'Default compiler optimizations')}
== 2019-03-11 00:40:53,147 easyconfig.py:666 DEBUG Initialized
toolchain: {'dummy': True, 'versionsuffix': '', 'version': '',
'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'dummy',
'full_mod_name': None, 'hidden': False, 'parsed': True,
'short_mod_name': None} (opts: None)
== 2019-03-11 00:40:53,147 easyconfig.py:608 DEBUG Dependencies BEFORE
filtering: [{'external_module_metadata': {}, 'full_mod_name':
'flex/2.6.3', 'toolchain': {'version': '', 'name': 'dummy'}, 'name':
'flex', 'dummy': True, 'short_mod_name': 'flex/2.6.3',
'external_module': False, 'versionsuffix': '', 'version': '2.6.3',
'toolchain_inherited': True, 'hidden': False, 'build_only': True},
{'external_module_metadata': {}, 'full_mod_name': 'Bison/3.0.4',
'toolchain': {'version': '', 'name': 'dummy'}, 'name': 'Bison', 'dummy':
True, 'short_mod_name': 'Bison/3.0.4', 'external_module': False,
'versionsuffix': '', 'version': '3.0.4', 'toolchain_inherited': True,
'hidden': False, 'build_only': True}, {'external_module_metadata': {},
'full_mod_name': 'zlib/1.2.11', 'toolchain': {'version': '', 'name':
'dummy'}, 'name': 'zlib', 'dummy': True, 'short_mod_name':
'zlib/1.2.11', 'external_module': False, 'versionsuffix': '', 'version':
'1.2.11', 'toolchain_inherited': True, 'hidden': False, 'build_only': True}]
== 2019-03-11 00:40:53,147 toolchain.py:376 DEBUG add_dependencies:
adding toolchain dependencies [{'external_module_metadata': {},
'full_mod_name': 'flex/2.6.3', 'toolchain': {'version': '', 'name':
'dummy'}, 'name': 'flex', 'dummy': True, 'short_mod_name': 'flex/2.6.3',
'external_module': False, 'versionsuffix': '', 'version': '2.6.3',
'toolchain_inherited': True, 'hidden': False, 'build_only': True},
{'external_module_metadata': {}, 'full_mod_name': 'Bison/3.0.4',
'toolchain': {'version': '', 'name': 'dummy'}, 'name': 'Bison', 'dummy':
True, 'short_mod_name': 'Bison/3.0.4', 'external_module': False,
'versionsuffix': '', 'version': '3.0.4', 'toolchain_inherited': True,
'hidden': False, 'build_only': True}, {'external_module_metadata': {},
'full_mod_name': 'zlib/1.2.11', 'toolchain': {'version': '', 'name':
'dummy'}, 'name': 'zlib', 'dummy': True, 'short_mod_name':
'zlib/1.2.11', 'external_module': False, 'versionsuffix': '', 'version':
'1.2.11', 'toolchain_inherited': True, 'hidden': False, 'build_only': True}]
== 2019-03-11 00:40:53,148 toolchain.py:386 DEBUG add_dependencies:
MODULEPATH:
/sNow/easybuild/centos/7.3.1611/Broadwell/modules/all:/sNow/easybuild/modules/all:/sNow/easybuild/modulefiles/Linux:/sNow/easybuild/modulefiles/Core:/sNow/easybuild/lmod/lmod/modulefiles/Core
== 2019-03-11 00:40:53,148 modules.py:422 DEBUG Found cached result for
'module avail' with key
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'libpthread-stubs/0.3-foss-2016b', 'libpthread-stubs/0.3-foss-2017a',
'libreadline/6.3', 'libreadline/6.3-GCCcore-6.3.0',
'libreadline/6.3-foss-2016a', 'libreadline/6.3-foss-2016b',
'libreadline/6.3-foss-2017a', 'libreadline/6.3-intel-2017a',
'libreadline/7.0-GCCcore-6.3.0', 'libtool/2.4.6',
'libtool/2.4.6-GCCcore-6.3.0', 'libtool/2.4.6-GNU-4.9.3-2.25',
'libtool/2.4.6-foss-2016a', 'libtool/2.4.6-foss-2016b',
'libtool/2.4.6-foss-2017a', 'libtool/2.4.6-intel-2017a',
'libunwind/1.1-foss-2016a', 'libunwind/1.1-foss-2016b',
'libxcb/1.11.1-foss-2016a', 'libxcb/1.11.1-foss-2016b',
'libxml2/2.9.3-foss-2016a', 'libxml2/2.9.3-foss-2016b',
'libxml2/2.9.3-foss-2017a', 'libxml2/2.9.4-GCCcore-6.3.0',
'libxml2/2.9.4-foss-2016b', 'libxml2/2.9.4-foss-2016b-Python-2.7.12',
'libxml2/2.9.4-foss-2017a', 'libxml2/2.9.4-foss-2017a-Python-2.7.13',
'libxml2/2.9.4-intel-2017a', 'libxml2/2.9.4-intel-2017a-Python-2.7.13',
'likwid/4.0.1-GNU-4.9.3-2.25', 'lm-sensors/3.4.0', 'lmod/7.4.17',
'makedepend/1.0.5-foss-2016a',
'matplotlib/1.5.1-foss-2016a-Python-2.7.11',
'matplotlib/1.5.1-foss-2016a-Python-2.7.11-freetype-2.6.3',
'matplotlib/1.5.1-foss-2016a-Python-3.5.1',
'matplotlib/1.5.3-foss-2016b-Python-2.7.12', 'nano/2.2.6-foss-2016b',
'ncurses/5.9-GCC-4.9.2', 'ncurses/5.9-foss-2016b', 'ncurses/6.0',
'ncurses/6.0-GCCcore-6.3.0', 'ncurses/6.0-foss-2016a',
'ncurses/6.0-foss-2016b', 'ncurses/6.0-foss-2017a',
'ncurses/6.0-intel-2017a', 'netCDF/4.4.1-foss-2016b',
'nettle/3.2-foss-2016b', 'nettle/3.2-foss-2017a',
'nettle/3.2-intel-2017a', 'nettle/3.3-intel-2017a',
'networkx/1.11-foss-2016a-Python-2.7.11',
'networkx/2.2-foss-2016b-Python-2.7.11', 'nodejs/4.4.7-foss-2016a',
'nodejs/6.10.3-foss-2017a', 'ns/2.35-foss-2016b',
'numactl/2.0.11-GCC-4.9.3-2.25', 'numactl/2.0.11-GCC-5.4.0-2.26',
'numactl/2.0.11-GCC-6.3.0-2.27', 'numactl/2.0.11-foss-2016a',
'numpy/1.11.0-foss-2016b-Python-2.7.11', 'otcl/1.14-foss-2016b',
'pandas/0.18.0-foss-2016a-Python-3.5.1',
'pip/8.1.2-foss-2016b-Python-2.7.12', 'pixman/0.34.0-GCCcore-6.3.0',
'pixman/0.34.0-foss-2016a', 'pixman/0.34.0-foss-2016b',
'pixman/0.34.0-foss-2017a', 'pkg-config/0.29-foss-2016a',
'pkg-config/0.29-foss-2016b', 'pkg-config/0.29.1-GCCcore-6.3.0',
'pkg-config/0.29.1-foss-2016b', 'pkg-config/0.29.1-foss-2017a',
'pkg-config/0.29.1-intel-2017a', 'pkg-config/0.29.2-intel-2017a',
'protobuf-python/3.2.0-foss-2016b-Python-2.7.12',
'protobuf/3.2.0-foss-2016b', 'protobuf/3.3.0-foss-2017a',
'qrupdate/1.1.2-foss-2016a', 'qrupdate/1.1.2-foss-2016b',
'qrupdate/1.1.2-intel-2017a', 'randrproto/1.5.0-foss-2016a',
'renderproto/0.11-foss-2016a', 'renderproto/0.11-foss-2016b',
'requests/2.10.0-foss-2016a-Python-2.7.11',
'scikit-learn/0.17.1-foss-2016a-Python-2.7.11',
'scikit-learn/0.17.1-foss-2016a-Python-3.5.1',
'scikit-learn/0.18.1-foss-2016b-Python-2.7.12', 'settarg/7.4.17',
'stress/1.0.4-foss-2016b', 'supermagic/20170824-foss-2016a',
'supermagic/20170824-foss-2017a', 'tclcl/1.20-foss-2016b',
'testpath/0.3-foss-2016a-Python-3.5.1', 'util-linux/2.29.2-intel-2017a',
'util-linux/2.30.1-GCCcore-6.3.0', 'x264/20160614-foss-2016b',
'xcb-proto/1.11', 'xextproto/7.3.0-foss-2016a',
'xextproto/7.3.0-foss-2016b', 'xextproto/7.3.0-foss-2017a',
'xineramaproto/1.2.1-foss-2016a', 'xorg-macros/1.19.0-foss-2016a',
'xorg-macros/1.19.0-foss-2016b', 'xorg-macros/1.19.0-foss-2017a',
'xprop/1.2.2-foss-2016a', 'xprop/1.2.2-foss-2016b',
'xprop/1.2.2-foss-2017a', 'xprop/1.2.2-intel-2017a',
'xproto/7.0.28-foss-2016a', 'xproto/7.0.28-foss-2016b',
'xproto/7.0.28-foss-2017a', 'xtrans/1.3.5-foss-2016a',
'xtrans/1.3.5-foss-2016b', 'xtrans/1.3.5-foss-2017a', 'zlib/1.2.11',
'zlib/1.2.11-GCCcore-6.3.0', 'zlib/1.2.11-foss-2016a',
'zlib/1.2.11-foss-2016b', 'zlib/1.2.7-foss-2016b', 'zlib/1.2.8',
'zlib/1.2.8-GCC-4.9.3-binutils-2.25', 'zlib/1.2.8-GCC-5.4.0-2.26',
'zlib/1.2.8-GCCcore-4.9.3', 'zlib/1.2.8-GCCcore-5.4.0',
'zlib/1.2.8-GCCcore-6.3.0', 'zlib/1.2.8-foss-2016a',
'zlib/1.2.8-foss-2016b', 'zlib/1.2.8-foss-2017a', 'zlib/1.2.8-intel-2017a']
== 2019-03-11 00:40:53,148 easyconfig.py:608 DEBUG Dependencies BEFORE
filtering: [{'external_module_metadata': {}, 'full_mod_name':
'flex/2.6.3', 'toolchain': {'version': '', 'name': 'dummy'}, 'name':
'flex', 'dummy': True, 'short_mod_name': 'flex/2.6.3',
'external_module': False, 'versionsuffix': '', 'version': '2.6.3',
'toolchain_inherited': True, 'hidden': False, 'build_only': True},
{'external_module_metadata': {}, 'full_mod_name': 'Bison/3.0.4',
'toolchain': {'version': '', 'name': 'dummy'}, 'name': 'Bison', 'dummy':
True, 'short_mod_name': 'Bison/3.0.4', 'external_module': False,
'versionsuffix': '', 'version': '3.0.4', 'toolchain_inherited': True,
'hidden': False, 'build_only': True}, {'external_module_metadata': {},
'full_mod_name': 'zlib/1.2.11', 'toolchain': {'version': '', 'name':
'dummy'}, 'name': 'zlib', 'dummy': True, 'short_mod_name':
'zlib/1.2.11', 'external_module': False, 'versionsuffix': '', 'version':
'1.2.11', 'toolchain_inherited': True, 'hidden': False, 'build_only': True}]
== 2019-03-11 00:40:53,175 build_log.py:158 ERROR EasyBuild crashed with
an error (at
easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/vsc_base-2.5.8-py2.7.egg/vsc/utils/exceptions.py:124
in __init__): Module is already loaded (EBROOTBINUTILS is set),
installation cannot continue. (at
easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_framework-3.5.0-py2.7.egg/easybuild/framework/easyblock.py:1522
in check_readiness_step)
== 2019-03-11 00:40:53,175 easyblock.py:2685 WARNING build failed (first
300 chars): Module is already loaded (EBROOTBINUTILS is set),
installation cannot continue.
== 2019-03-11 00:40:53,175 easyblock.py:279 INFO Closing log for
application name binutils version 2.28
Please do help us.
With Regards
Sona
