Thank you for your response.
I have done the same as you suggested but I got same error.
eb binutils-2.31.1.eb --detect-loaded-modules=purge
== temporary log file in case of crash
/tmp/jobs/snow/6238/eb-XukcYq/easybuild-5us1c8.log
== processing EasyBuild easyconfig
/sNow/easybuild/software/EasyBuild/3.2.1/lib/python2.7/site-packages/easybuild_easyconfigs-3.2.1-py2.7.egg/easybuild/easyconfigs/b/binutils/binutils-2.31.1.eb
== building and installing binutils/2.31.1. <http://2.31.1.>..
== fetching files...
== creating build dir, resetting environment...
== unpacking...
== patching...
== preparing...
== configuring...
== building...
== FAILED: Installation ended unsuccessfully (build directory:
/sNow/easybuild/centos/7.3.1611/Broadwell/build/binutils/2.31.1/dummy-):
build failed (first 300 chars): cmd " env LIBS='-Wl,-rpath=/usr/lib
-Wl,-rpath=/usr/lib64' make -j 1 CFLAGS="-g -O2 -fPIC" " exited with
exit code 2 and output:
make[1]: Entering directory
`/sNow/easybuild/centos/7.3.1611/Broadwell/build/binutils/2.31.1/dummy-/binutils-2.31.1'
Configuring in ./libiberty
configure: creating cache
== Results of the build can be found in the log file(s)
/sNow/easybuild/tmp/easybuild-binutils-2.31.1-20190311.024240.SUBdY.log
ERROR: Build of
/sNow/easybuild/software/EasyBuild/3.2.1/lib/python2.7/site-packages/easybuild_easyconfigs-3.2.1-py2.7.egg/easybuild/easyconfigs/b/binutils/binutils-2.31.1.eb
failed (err: 'build failed (first 300 chars): cmd " env
LIBS=\'-Wl,-rpath=/usr/lib -Wl,-rpath=/usr/lib64\' make -j 1
CFLAGS="-g -O2 -fPIC" " exited with exit code 2 and output:\nmake[1]:
Entering directory
`/sNow/easybuild/centos/7.3.1611/Broadwell/build/binutils/2.31.1/dummy-/binutils-2.31.1\'\nConfiguring
in ./libiberty\nconfigure: creating cache')
On Mon, Mar 11, 2019 at 12:04 PM Kenneth Hoste <[email protected]
<mailto:[email protected]>> wrote:
Dear Sona,
As the warning describes, you shouldn't have any software modules
loaded
when building software with EasyBuild.
It may explain the problem you are seeing.
Please try running 'eb' again after unloaded the modules, using 'module
purge'.
regards,
Kenneth
On 11/03/2019 06:02, Ms. Sona CP wrote:
> Hi,
> While installing iimpi file, we are getting an error with binutils
> showing module already loaded. Many more software installation like
> intel/2018a , Python 3.6.4 etc showed same error. It is showing a
> linking error with zlib file. How to resolve this error.
> Following are the log file contents got from iimpi installation
>
> temporary log file in case of crash
> /tmp/jobs/snow/6234/eb-SX6mFh/easybuild-vCIfI1.log
>
> WARNING: Found one or more non-allowed loaded (EasyBuild-generated)
> modules in current environment:
> * GCCcore/5.4.0
> * GCCcore/5.4.0
> * binutils/2.26-GCCcore-5.4.0
> * numactl/2.0.11-GCC-5.4.0-2.26
> * hwloc/1.11.3-GCC-5.4.0-2.26
> * OpenMPI/1.10.3-GCC-5.4.0-2.26
> * OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1
> * gompi/2016b
> * FFTW/3.3.4-gompi-2016b
> * ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1
> * foss/2016b
> * zlib/1.2.11-foss-2016b
>
> This is not recommended since it may affect the installation
> procedure(s) performed by EasyBuild.
>
> To make EasyBuild allow particular loaded modules, use the
> --allow-loaded-modules configuration option.
> To specify action to take when loaded modules are detected, use
> --detect-loaded-modules={error,ignore,purge,unload,warn}.
>
> See
>
http://easybuild.readthedocs.io/en/latest/Detecting_loaded_modules.html
> for more information.
>
> == resolving dependencies ...
> == processing EasyBuild easyconfig
>
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.0-py2.7.egg/easybuild/easyconfigs/b/binutils/binutils-2.28.eb
> == building and installing binutils/2.28...
> == fetching files...
> == creating build dir, resetting environment...
> == FAILED: Installation ended unsuccessfully (build directory:
>
/sNow/easybuild/centos/7.3.1611/Broadwell/build/binutils/2.28/dummy-):
> build failed (first 300 chars): Module is already loaded
(EBROOTBINUTILS
> is set), installation cannot continue.
> == Results of the build can be found in the log file(s)
> /sNow/easybuild/tmp/easybuild-binutils-2.28-20190311.004052.fAtBQ.log
> ERROR: Build of
>
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.0-py2.7.egg/easybuild/easyconfigs/b/binutils/binutils-2.28.eb
> failed (err: 'build failed (first 300 chars): Module is already
loaded
> (EBROOTBINUTILS is set), installation cannot continue.')
>
snow@sny02:/sNow/easybuild/software/EasyBuild/3.2.1/lib/python2.7/site-packages/easybuild_easyconfigs-3.2.1-py2.7.egg/easybuild/easyconfigs/i/
> iimpi$ cat
> /sNow/easybuild/tmp/easybuild-binutils-2.28-20190311.004052.fAtBQ.log
> == 2019-03-11 00:40:52,830 easyblock.py:264 INFO This is
EasyBuild 3.5.0
> (framework: 3.5.0, easyblocks: 3.5.0) on host
> sny02.sunya.rajagiritech.edu.in
<http://sny02.sunya.rajagiritech.edu.in>
<http://sny02.sunya.rajagiritech.edu.in>.
> == 2019-03-11 00:40:52,830 easyblock.py:270 INFO This is easyblock
> EB_binutils from module easybuild.easyblocks.binutils
>
(/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyblocks-3.5.0-py2.7.egg/easybuild/easyblocks/b/binutils.pyo)
> == 2019-03-11 00:40:52,831 easyblock.py:815 INFO Build dir set to
> /sNow/easybuild/centos/7.3.1611/Broadwell/build/binutils/2.28/dummy-
> == 2019-03-11 00:40:52,831 config.py:460 DEBUG software install
path as
> specified by 'installpath' and 'subdir_software':
> /sNow/easybuild/centos/7.3.1611/Broadwell/software
> == 2019-03-11 00:40:52,831 easyconfig.py:1688 DEBUG Determining
software
> installation subdir for
> <easybuild.framework.easyconfig.easyconfig.EasyConfig object at
0x2932210>
> == 2019-03-11 00:40:52,831 easyconfig.py:1694 DEBUG Obtained subdir
> binutils/2.28
> == 2019-03-11 00:40:52,831 easyblock.py:856 INFO Software install
dir
> set to
/sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.28
> == 2019-03-11 00:40:52,831 config.py:460 DEBUG modules install
path as
> specified by 'installpath' and 'subdir_modules':
> /sNow/easybuild/centos/7.3.1611/Broadwell/modules
> == 2019-03-11 00:40:52,831 easyblock.py:861 INFO Module install
dir set
> to /sNow/easybuild/centos/7.3.1611/Broadwell/modules/all
> == 2019-03-11 00:40:52,831 easyblock.py:249 INFO Init completed for
> application name binutils version 2.28
> == 2019-03-11 00:40:52,831 easyblock.py:2659 INFO Obtained
application
> instance of for binutils (easyblock: None)
> == 2019-03-11 00:40:52,831 easyblock.py:2672 DEBUG Skip set to False
> == 2019-03-11 00:40:52,832 build_log.py:233 INFO building and
installing
> binutils/2.28...
> == 2019-03-11 00:40:52,832 easyblock.py:2438 DEBUG Not skipping
fetch
> step (skippable: False, skip: None, skipsteps: [], module_only:
False,
> force: False
> == 2019-03-11 00:40:52,832 build_log.py:233 INFO fetching files...
> == 2019-03-11 00:40:52,832 easyblock.py:2446 INFO Starting fetch step
> == 2019-03-11 00:40:52,832 templates.py:151 DEBUG config:
> <easybuild.framework.easyconfig.easyconfig.EasyConfig object at
0x2932210>
> == 2019-03-11 00:40:52,832 templates.py:175 DEBUG version found in
> easyconfig is 2.28
> == 2019-03-11 00:40:52,832 templates.py:219 DEBUG name:
github_account,
> config: None
> == 2019-03-11 00:40:52,832 templates.py:219 DEBUG name: name,
config:
> binutils
> == 2019-03-11 00:40:52,832 templates.py:219 DEBUG name: version,
config:
> 2.28
> == 2019-03-11 00:40:52,833 templates.py:219 DEBUG name:
versionsuffix,
> config:
> == 2019-03-11 00:40:52,833 templates.py:219 DEBUG name:
versionprefix,
> config:
> == 2019-03-11 00:40:52,833 templates.py:151 DEBUG config:
> <easybuild.framework.easyconfig.easyconfig.EasyConfig object at
0x2932210>
> == 2019-03-11 00:40:52,833 templates.py:175 DEBUG version found in
> easyconfig is 2.28
> == 2019-03-11 00:40:52,833 templates.py:219 DEBUG name:
github_account,
> config: None
> == 2019-03-11 00:40:52,833 templates.py:219 DEBUG name: name,
config:
> binutils
> == 2019-03-11 00:40:52,833 templates.py:219 DEBUG name: version,
config:
> 2.28
> == 2019-03-11 00:40:52,833 templates.py:219 DEBUG name:
versionsuffix,
> config:
> == 2019-03-11 00:40:52,833 templates.py:219 DEBUG name:
versionprefix,
> config:
> == 2019-03-11 00:40:52,833 easyblock.py:2452 INFO Running method
> fetch_step part of step fetch
> == 2019-03-11 00:40:52,834 easyblock.py:1557 WARNING Easyconfig
does not
> specify an EasyBuild-version (key 'easybuild_version')! Assuming the
> latest version
> == 2019-03-11 00:40:52,834 filetools.py:343 INFO Command eb found at
>
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/bin/eb
> == 2019-03-11 00:40:52,834 tools.py:263 DEBUG Also considering
> installation prefix
>
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0.
<http://3.5.0.>
> <http://3.5.0.>..
> == 2019-03-11 00:40:52,834 tools.py:268 DEBUG Checking for
> easybuild/easyconfigs at
>
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.0-py2.7.egg/easybuild/easyconfigs/easybuild/easyconfigs
> == 2019-03-11 00:40:52,834 tools.py:268 DEBUG Checking for
> easybuild/easyconfigs at easybuild/easyconfigs
> == 2019-03-11 00:40:52,834 tools.py:268 DEBUG Checking for
> easybuild/easyconfigs at
>
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/vsc_install-0.10.26-py2.7.egg/easybuild/easyconfigs
> == 2019-03-11 00:40:52,835 tools.py:268 DEBUG Checking for
> easybuild/easyconfigs at
>
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/vsc_base-2.5.8-py2.7.egg/easybuild/easyconfigs
> == 2019-03-11 00:40:52,835 tools.py:268 DEBUG Checking for
> easybuild/easyconfigs at
>
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_framework-3.5.0-py2.7.egg/easybuild/easyconfigs
> == 2019-03-11 00:40:52,835 tools.py:268 DEBUG Checking for
> easybuild/easyconfigs at
>
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyblocks-3.5.0-py2.7.egg/easybuild/easyconfigs
> == 2019-03-11 00:40:52,835 tools.py:268 DEBUG Checking for
> easybuild/easyconfigs at
>
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.0-py2.7.egg/easybuild/easyconfigs
> == 2019-03-11 00:40:52,835 tools.py:272 DEBUG Added
>
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.0-py2.7.egg/easybuild/easyconfigs
> to list of paths for easybuild/easyconfigs
> == 2019-03-11 00:40:52,835 tools.py:268 DEBUG Checking for
> easybuild/easyconfigs at
>
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild/easyconfigs
> == 2019-03-11 00:40:52,836 tools.py:268 DEBUG Checking for
> easybuild/easyconfigs at
>
/sNow/easybuild/installation/lib/python2.7/site-packages/easybuild/easyconfigs
> == 2019-03-11 00:40:52,836 tools.py:268 DEBUG Checking for
> easybuild/easyconfigs at
>
/sNow/easybuild/software/EasyBuild/3.2.1/lib/python2.7/site-packages/easybuild_easyconfigs-3.2.1-py2.7.egg/easybuild/easyconfigs/i/iimpi/easybuild/easyconfigs
> == 2019-03-11 00:40:52,836 tools.py:268 DEBUG Checking for
> easybuild/easyconfigs at
/usr/lib64/python27.zip/easybuild/easyconfigs
> == 2019-03-11 00:40:52,836 tools.py:268 DEBUG Checking for
> easybuild/easyconfigs at /usr/lib64/python2.7/easybuild/easyconfigs
> == 2019-03-11 00:40:52,836 tools.py:268 DEBUG Checking for
> easybuild/easyconfigs at
> /usr/lib64/python2.7/plat-linux2/easybuild/easyconfigs
> == 2019-03-11 00:40:52,836 tools.py:268 DEBUG Checking for
> easybuild/easyconfigs at
/usr/lib64/python2.7/lib-tk/easybuild/easyconfigs
> == 2019-03-11 00:40:52,836 tools.py:268 DEBUG Checking for
> easybuild/easyconfigs at
/usr/lib64/python2.7/lib-old/easybuild/easyconfigs
> == 2019-03-11 00:40:52,837 tools.py:268 DEBUG Checking for
> easybuild/easyconfigs at
> /usr/lib64/python2.7/lib-dynload/easybuild/easyconfigs
> == 2019-03-11 00:40:52,837 tools.py:268 DEBUG Checking for
> easybuild/easyconfigs at
> /usr/lib64/python2.7/site-packages/easybuild/easyconfigs
> == 2019-03-11 00:40:52,837 tools.py:268 DEBUG Checking for
> easybuild/easyconfigs at
> /usr/lib/python2.7/site-packages/easybuild/easyconfigs
> == 2019-03-11 00:40:52,838 tools.py:268 DEBUG Checking for
> easybuild/easyconfigs at
>
/sNow/easybuild/installation/lib/python2.7/site-packages/easybuild/easyconfigs
> == 2019-03-11 00:40:52,838 tools.py:268 DEBUG Checking for
> easybuild/easyconfigs at
>
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/easybuild/easyconfigs
> == 2019-03-11 00:40:52,839 easyblock.py:646 INFO Found file
> binutils-2.28.tar.gz at
> /sNow/easybuild/sources/b/binutils/binutils-2.28.tar.gz
> == 2019-03-11 00:40:52,839 easyblock.py:362 DEBUG File
> /sNow/easybuild/sources/b/binutils/binutils-2.28.tar.gz found for
source
> binutils-2.28.tar.gz
> == 2019-03-11 00:40:52,839 easyblock.py:374 INFO Added sources:
> [{'path': '/sNow/easybuild/sources/b/binutils/binutils-2.28.tar.gz',
> 'cmd': None, 'finalpath':
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/build/binutils/2.28/dummy-',
> 'name': 'binutils-2.28.tar.gz', 'checksum':
> 'cd717966fc761d840d451dbd58d44e1e5b92949d2073d75b73fccb476d772fcf'}]
> == 2019-03-11 00:40:52,839 easyblock.py:1598 INFO no patches provided
> == 2019-03-11 00:40:52,839 filetools.py:652 DEBUG Using blocksize
> 16777216 for calculating the checksum
> == 2019-03-11 00:40:52,925 easyblock.py:1608 INFO md5 checksum for
> /sNow/easybuild/sources/b/binutils/binutils-2.28.tar.gz:
> d5d270fd0b698ed59ca5ade8e1b5059c
> == 2019-03-11 00:40:52,925 filetools.py:652 DEBUG Using blocksize
> 16777216 for calculating the checksum
> == 2019-03-11 00:40:53,059 easyblock.py:1608 INFO sha256 checksum
for
> /sNow/easybuild/sources/b/binutils/binutils-2.28.tar.gz:
> cd717966fc761d840d451dbd58d44e1e5b92949d2073d75b73fccb476d772fcf
> == 2019-03-11 00:40:53,060 easyconfig.py:1676 DEBUG Determining full
> module name for
<easybuild.framework.easyconfig.easyconfig.EasyConfig
> object at 0x2932210> (force_visible: False)
> == 2019-03-11 00:40:53,060 easyconfig.py:1656 DEBUG No alternative
> software name specified to determine module name with
> == 2019-03-11 00:40:53,060 utilities.py:103 DEBUG Module name
> binutils/2.28 validated
> == 2019-03-11 00:40:53,060 easyconfig.py:1683 DEBUG Obtained
valid full
> module name binutils/2.28
> == 2019-03-11 00:40:53,060 config.py:460 DEBUG modules install
path as
> specified by 'installpath' and 'subdir_modules':
> /sNow/easybuild/centos/7.3.1611/Broadwell/modules
> == 2019-03-11 00:40:53,060 easyblock.py:1641 INFO Checking dirs that
> need to be created:
> ['/sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.28',
> '/sNow/easybuild/centos/7.3.1611/Broadwell/modules/all/binutils',
> '/sNow/easybuild/centos/7.3.1611/Broadwell/modules/tools/binutils']
> == 2019-03-11 00:40:53,061 filetools.py:1135 DEBUG Not creating
existing
> path /sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.28
> == 2019-03-11 00:40:53,061 filetools.py:1135 DEBUG Not creating
existing
> path /sNow/easybuild/centos/7.3.1611/Broadwell/modules/all/binutils
> == 2019-03-11 00:40:53,061 filetools.py:1135 DEBUG Not creating
existing
> path /sNow/easybuild/centos/7.3.1611/Broadwell/modules/tools/binutils
> == 2019-03-11 00:40:53,061 easyblock.py:2438 DEBUG Not skipping
ready
> step (skippable: False, skip: None, skipsteps: [], module_only:
False,
> force: False
> == 2019-03-11 00:40:53,062 build_log.py:233 INFO creating build dir,
> resetting environment...
> == 2019-03-11 00:40:53,062 easyblock.py:2446 INFO Starting ready step
> == 2019-03-11 00:40:53,062 templates.py:151 DEBUG config:
> <easybuild.framework.easyconfig.easyconfig.EasyConfig object at
0x2932210>
> == 2019-03-11 00:40:53,062 templates.py:175 DEBUG version found in
> easyconfig is 2.28
> == 2019-03-11 00:40:53,062 templates.py:219 DEBUG name:
github_account,
> config: None
> == 2019-03-11 00:40:53,062 templates.py:219 DEBUG name: name,
config:
> binutils
> == 2019-03-11 00:40:53,062 templates.py:219 DEBUG name: version,
config:
> 2.28
> == 2019-03-11 00:40:53,062 templates.py:219 DEBUG name:
versionsuffix,
> config:
> == 2019-03-11 00:40:53,062 templates.py:219 DEBUG name:
versionprefix,
> config:
> == 2019-03-11 00:40:53,062 templates.py:151 DEBUG config:
> <easybuild.framework.easyconfig.easyconfig.EasyConfig object at
0x2932210>
> == 2019-03-11 00:40:53,063 templates.py:175 DEBUG version found in
> easyconfig is 2.28
> == 2019-03-11 00:40:53,063 templates.py:219 DEBUG name:
github_account,
> config: None
> == 2019-03-11 00:40:53,063 templates.py:219 DEBUG name: name,
config:
> binutils
> == 2019-03-11 00:40:53,063 templates.py:219 DEBUG name: version,
config:
> 2.28
> == 2019-03-11 00:40:53,063 templates.py:219 DEBUG name:
versionsuffix,
> config:
> == 2019-03-11 00:40:53,063 templates.py:219 DEBUG name:
versionprefix,
> config:
> == 2019-03-11 00:40:53,063 easyblock.py:2452 INFO Running method
> check_readiness_step part of step ready
> == 2019-03-11 00:40:53,063 easyblock.py:1502 DEBUG Desired
parallelism
> specified via 'parallel' build option: None
> == 2019-03-11 00:40:53,064 affinity.py:211 DEBUG
sched_getaffinity for
> pid 10580 returned cpuset 0
> == 2019-03-11 00:40:53,064 run.py:163 DEBUG run_cmd: running cmd
ulimit
> -u (in
>
/sNow/easybuild/software/EasyBuild/3.2.1/lib/python2.7/site-packages/easybuild_easyconfigs-3.2.1-py2.7.egg/easybuild/easyconfigs/i/iimpi)
> == 2019-03-11 00:40:53,064 run.py:183 INFO running cmd: ulimit -u
> == 2019-03-11 00:40:53,092 run.py:488 DEBUG cmd "ulimit -u"
exited with
> exit code 0 and output:
> 515142
>
> == 2019-03-11 00:40:53,092 run.py:522 DEBUG Using default regular
> expression: (?<![(,-]|\w)(?:error|segmentation
fault|failed)(?![(,-]|\.?\w)
> == 2019-03-11 00:40:53,092 easyblock.py:1505 INFO Setting
parallelism: 1
> == 2019-03-11 00:40:53,092 modules.py:641 DEBUG Current MODULEPATH:
>
/sNow/easybuild/centos/7.3.1611/Broadwell/modules/all:/sNow/easybuild/modules/all:/sNow/easybuild/modulefiles/Linux:/sNow/easybuild/modulefiles/Core:/sNow/easybuild/lmod/lmod/modulefiles/Core
> == 2019-03-11 00:40:53,093 modules.py:648 DEBUG Changing
LD_LIBRARY_PATH
> from
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/zlib/1.2.11-foss-2016b/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/FFTW/3.3.4-gompi-2016b/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenMPI/1.10.3-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/hwloc/1.11.3-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/numactl/2.0.11-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.26-GCCcore-5.4.0/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib/gcc/x86_64-unknown-linux-gnu/5.4.0:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib64:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib'
> to
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/zlib/1.2.11-foss-2016b/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/FFTW/3.3.4-gompi-2016b/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenMPI/1.10.3-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/hwloc/1.11.3-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/numactl/2.0.11-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.26-GCCcore-5.4.0/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib/gcc/x86_64-unknown-linux-gnu/5.4.0:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib64:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib'
> in environment for module command
> == 2019-03-11 00:40:53,093 modules.py:648 DEBUG Changing
LD_PRELOAD from
> '' to '' in environment for module command
> == 2019-03-11 00:40:53,093 modules.py:652 DEBUG Running module
command
> '/sNow/easybuild/lmod/lmod/libexec/lmod python --terse list' from
>
/sNow/easybuild/software/EasyBuild/3.2.1/lib/python2.7/site-packages/easybuild_easyconfigs-3.2.1-py2.7.egg/easybuild/easyconfigs/i/iimpi
> == 2019-03-11 00:40:53,144 modules.py:658 DEBUG Output of module
command
> '/sNow/easybuild/lmod/lmod/libexec/lmod python --terse list':
stdout:
> os.environ["MODULEPATH"] =
>
"/sNow/easybuild/centos/7.3.1611/Broadwell/modules/all:/sNow/easybuild/modules/all:/sNow/easybuild/modulefiles/Linux:/sNow/easybuild/modulefiles/Core:/sNow/easybuild/lmod/lmod/modulefiles/Core";
> os.environ["_ModuleTable001_"] =
>
"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";
> os.environ["_ModuleTable002_"] =
>
"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";
> os.environ["_ModuleTable003_"] =
>
"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";
> os.environ["_ModuleTable004_"] =
>
"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";
> os.environ["_ModuleTable005_"] =
>
"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";
> os.environ["_ModuleTable006_"] =
>
"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";
> os.environ["_ModuleTable007_"] =
>
"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";
> os.environ["_ModuleTable008_"] =
>
"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";
> os.environ["_ModuleTable009_"] =
>
"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";
> os.environ["_ModuleTable010_"] =
> "Tm93L2Vhc3lidWlsZC9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==";
> os.environ["_ModuleTable_Sz_"] = "10";
> ; stderr: EasyBuild/3.5.0
> GCCcore/5.4.0
> binutils/2.26-GCCcore-5.4.0
> GCC/5.4.0-2.26
> numactl/2.0.11-GCC-5.4.0-2.26
> hwloc/1.11.3-GCC-5.4.0-2.26
> OpenMPI/1.10.3-GCC-5.4.0-2.26
> OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1
> gompi/2016b
> FFTW/3.3.4-gompi-2016b
> ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1
> foss/2016b
> zlib/1.2.11-foss-2016b
>
> == 2019-03-11 00:40:53,144 modules.py:1109 DEBUG Output found in
stdout,
> seems like '/sNow/easybuild/lmod/lmod/libexec/lmod python --terse
list'
> ran fine
> == 2019-03-11 00:40:53,144 modules.py:695 DEBUG Correcting paths in
> $LD_LIBRARY_PATH from
>
['/sNow/easybuild/centos/7.3.1611/Broadwell/software/zlib/1.2.11-foss-2016b/lib',
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1/lib',
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/FFTW/3.3.4-gompi-2016b/lib',
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1/lib',
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenMPI/1.10.3-GCC-5.4.0-2.26/lib',
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/hwloc/1.11.3-GCC-5.4.0-2.26/lib',
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/numactl/2.0.11-GCC-5.4.0-2.26/lib',
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.26-GCCcore-5.4.0/lib',
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib/gcc/x86_64-unknown-linux-gnu/5.4.0',
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib64',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib']
> to
>
['/sNow/easybuild/centos/7.3.1611/Broadwell/software/zlib/1.2.11-foss-2016b/lib',
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1/lib',
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/FFTW/3.3.4-gompi-2016b/lib',
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1/lib',
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenMPI/1.10.3-GCC-5.4.0-2.26/lib',
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/hwloc/1.11.3-GCC-5.4.0-2.26/lib',
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/numactl/2.0.11-GCC-5.4.0-2.26/lib',
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.26-GCCcore-5.4.0/lib',
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib/gcc/x86_64-unknown-linux-gnu/5.4.0',
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib64',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib']
> == 2019-03-11 00:40:53,145 environment.py:97 INFO Environment
variable
> LD_LIBRARY_PATH set to
>
/sNow/easybuild/centos/7.3.1611/Broadwell/software/zlib/1.2.11-foss-2016b/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/FFTW/3.3.4-gompi-2016b/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenMPI/1.10.3-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/hwloc/1.11.3-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/numactl/2.0.11-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.26-GCCcore-5.4.0/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib/gcc/x86_64-unknown-linux-gnu/5.4.0:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib64:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib
> (previous value:
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/zlib/1.2.11-foss-2016b/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/FFTW/3.3.4-gompi-2016b/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenMPI/1.10.3-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/hwloc/1.11.3-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/numactl/2.0.11-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.26-GCCcore-5.4.0/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib/gcc/x86_64-unknown-linux-gnu/5.4.0:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib64:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib')
> == 2019-03-11 00:40:53,145 modules.py:695 DEBUG Correcting paths in
> $LD_PRELOAD from [''] to []
> == 2019-03-11 00:40:53,145 environment.py:97 INFO Environment
variable
> LD_PRELOAD set to (previous value: '')
> == 2019-03-11 00:40:53,145 easyblock.py:1510 WARNING Loaded modules
> detected: ['EasyBuild/3.5.0', 'GCCcore/5.4.0',
> 'binutils/2.26-GCCcore-5.4.0', 'GCC/5.4.0-2.26',
> 'numactl/2.0.11-GCC-5.4.0-2.26', 'hwloc/1.11.3-GCC-5.4.0-2.26',
> 'OpenMPI/1.10.3-GCC-5.4.0-2.26',
> 'OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1', 'gompi/2016b',
> 'FFTW/3.3.4-gompi-2016b',
> 'ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1',
> 'foss/2016b', 'zlib/1.2.11-foss-2016b']
> == 2019-03-11 00:40:53,145 utilities.py:101 DEBUG Skipping
importing of
> toolchain modules, processing of toolchain constants is already done.
> == 2019-03-11 00:40:53,146 systemtools.py:211 DEBUG Determined CPU
> architecture: x86_64
> == 2019-03-11 00:40:53,146 systemtools.py:211 DEBUG Determined CPU
> architecture: x86_64
> == 2019-03-11 00:40:53,146 systemtools.py:247 DEBUG Determined CPU
> vendor on Linux as being 'Intel' via regex
'vendor_id\s+:\s*(\S+)' in
> /proc/cpuinfo
> == 2019-03-11 00:40:53,146 systemtools.py:273 DEBUG Using vendor
as CPU
> family: Intel
> == 2019-03-11 00:40:53,147 utilities.py:140 DEBUG Obtained new
toolchain
> instance for ('dummy', ''): {'dummy': True, 'versionsuffix': '',
> 'version': '', 'toolchain': {'version': 'dummy', 'name': 'dummy'},
> 'name': 'dummy', 'full_mod_name': None, 'hidden': False,
'parsed': True,
> 'short_mod_name': None}
> == 2019-03-11 00:40:53,147 options.py:64 DEBUG Using toolchain
options
> {'precise': (False, 'High precision'), 'verbose': (False, 'Verbose
> output'), 'rpath': (True, 'Use RPATH wrappers when --rpath is
enabled in
> EasyBuild configuration'), 'pic': (False, 'Use PIC'), 'static':
(False,
> 'Build static library'), 'optarch': (True, 'Enable architecture
> optimizations'), 'ieee': (False, 'Adhere to IEEE-754 rules'),
> 'veryloose': (False, 'Very loose precision'), 'strict': (False,
'Strict
> (highest) precision'), 'unroll': (False, 'Unroll loops'), 'lowopt':
> (False, 'Low compiler optimizations'), 'shared': (False, 'Build
shared
> library'), 'opt': (False, 'High compiler optimizations'), 'i8':
(False,
> 'Integers are 8 byte integers'), 'loose': (False, 'Loose
precision'),
> 'cstd': (None, 'Specify C standard'), 'defaultprec': (False,
'Default
> precision'), 'openmp': (False, 'Enable OpenMP'), 'noopt': (False,
> 'Disable compiler optimizations'), 'packed-linker-options': (False,
> 'Pack the linker options as comma separated list'), 'r8': (False,
'Real
> is 8 byte real'), 'cciscxx': (False, 'Use CC as CXX'), '32bit':
(False,
> 'Compile 32bit target'), 'debug': (False, 'Enable debug'),
'defaultopt':
> (False, 'Default compiler optimizations')}
> == 2019-03-11 00:40:53,147 easyconfig.py:666 DEBUG Initialized
> toolchain: {'dummy': True, 'versionsuffix': '', 'version': '',
> 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'dummy',
> 'full_mod_name': None, 'hidden': False, 'parsed': True,
> 'short_mod_name': None} (opts: None)
> == 2019-03-11 00:40:53,147 easyconfig.py:608 DEBUG Dependencies
BEFORE
> filtering: [{'external_module_metadata': {}, 'full_mod_name':
> 'flex/2.6.3', 'toolchain': {'version': '', 'name': 'dummy'}, 'name':
> 'flex', 'dummy': True, 'short_mod_name': 'flex/2.6.3',
> 'external_module': False, 'versionsuffix': '', 'version': '2.6.3',
> 'toolchain_inherited': True, 'hidden': False, 'build_only': True},
> {'external_module_metadata': {}, 'full_mod_name': 'Bison/3.0.4',
> 'toolchain': {'version': '', 'name': 'dummy'}, 'name': 'Bison',
'dummy':
> True, 'short_mod_name': 'Bison/3.0.4', 'external_module': False,
> 'versionsuffix': '', 'version': '3.0.4', 'toolchain_inherited':
True,
> 'hidden': False, 'build_only': True},
{'external_module_metadata': {},
> 'full_mod_name': 'zlib/1.2.11', 'toolchain': {'version': '', 'name':
> 'dummy'}, 'name': 'zlib', 'dummy': True, 'short_mod_name':
> 'zlib/1.2.11', 'external_module': False, 'versionsuffix': '',
'version':
> '1.2.11', 'toolchain_inherited': True, 'hidden': False,
'build_only': True}]
> == 2019-03-11 00:40:53,147 toolchain.py:376 DEBUG add_dependencies:
> adding toolchain dependencies [{'external_module_metadata': {},
> 'full_mod_name': 'flex/2.6.3', 'toolchain': {'version': '', 'name':
> 'dummy'}, 'name': 'flex', 'dummy': True, 'short_mod_name':
'flex/2.6.3',
> 'external_module': False, 'versionsuffix': '', 'version': '2.6.3',
> 'toolchain_inherited': True, 'hidden': False, 'build_only': True},
> {'external_module_metadata': {}, 'full_mod_name': 'Bison/3.0.4',
> 'toolchain': {'version': '', 'name': 'dummy'}, 'name': 'Bison',
'dummy':
> True, 'short_mod_name': 'Bison/3.0.4', 'external_module': False,
> 'versionsuffix': '', 'version': '3.0.4', 'toolchain_inherited':
True,
> 'hidden': False, 'build_only': True},
{'external_module_metadata': {},
> 'full_mod_name': 'zlib/1.2.11', 'toolchain': {'version': '', 'name':
> 'dummy'}, 'name': 'zlib', 'dummy': True, 'short_mod_name':
> 'zlib/1.2.11', 'external_module': False, 'versionsuffix': '',
'version':
> '1.2.11', 'toolchain_inherited': True, 'hidden': False,
'build_only': True}]
> == 2019-03-11 00:40:53,148 toolchain.py:386 DEBUG add_dependencies:
> MODULEPATH:
>
/sNow/easybuild/centos/7.3.1611/Broadwell/modules/all:/sNow/easybuild/modules/all:/sNow/easybuild/modulefiles/Linux:/sNow/easybuild/modulefiles/Core:/sNow/easybuild/lmod/lmod/modulefiles/Core
> == 2019-03-11 00:40:53,148 modules.py:422 DEBUG Found cached
result for
> 'module avail' with key
>
'('MODULEPATH=/sNow/easybuild/centos/7.3.1611/Broadwell/modules/all:/sNow/easybuild/modules/all:/sNow/easybuild/modulefiles/Linux:/sNow/easybuild/modulefiles/Core:/sNow/easybuild/lmod/lmod/modulefiles/Core',
> 'lmod', '--show-hidden')': ['ANSYS/18.1', 'ATK/2.22.0-foss-2016b',
> 'Advisor/2017_update2', 'Anaconda3/4.0.0', 'Autoconf/2.69',
> 'Autoconf/2.69-GCCcore-6.3.0', 'Autoconf/2.69-GNU-4.9.3-2.25',
> 'Autoconf/2.69-foss-2016a', 'Autoconf/2.69-foss-2016b',
> 'Autoconf/2.69-foss-2017a', 'Autoconf/2.69-intel-2017a',
> 'Automake/1.15', 'Automake/1.15-GCCcore-6.3.0',
> 'Automake/1.15-GNU-4.9.3-2.25', 'Automake/1.15-foss-2016a',
> 'Automake/1.15-foss-2016b', 'Automake/1.15-foss-2017a',
> 'Automake/1.15-intel-2017a', 'Autotools/20150215',
> 'Autotools/20150215-GCCcore-6.3.0',
'Autotools/20150215-GNU-4.9.3-2.25',
> 'Autotools/20150215-foss-2016a', 'Autotools/20150215-foss-2016b',
> 'Autotools/20150215-foss-2017a', 'Autotools/20150215-intel-2017a',
> 'Bison/3.0.4', 'Bison/3.0.4-GCC-4.9.2',
> 'Bison/3.0.4-GCC-4.9.3-binutils-2.25', 'Bison/3.0.4-GCCcore-4.9.3',
> 'Bison/3.0.4-GCCcore-5.4.0', 'Bison/3.0.4-GCCcore-6.3.0',
> 'Bison/3.0.4-foss-2016a', 'Bison/3.0.4-foss-2016b',
> 'Bison/3.0.4-foss-2017a', 'Bison/3.0.4-intel-2017a',
> 'Boost/1.61.0-foss-2016b', 'Boost/1.61.0-foss-2017a',
> 'Boost/1.63.0-intel-2017a-Python-2.7.13', 'CGAL/4.8.1-foss-2016b',
> 'CMake/3.4.3-foss-2016a', 'CMake/3.4.3-foss-2016b',
> 'CMake/3.5.2-foss-2016b', 'CMake/3.6.1-foss-2016b',
> 'CMake/3.6.1-foss-2017a', 'CMake/3.7.1-foss-2016b',
> 'CMake/3.7.2-GCCcore-6.3.0', 'CMake/3.8.0-GCCcore-6.3.0',
> 'CMake/3.8.1-GCCcore-6.3.0', 'CUDA/8.0.61',
'CUDA/8.0.61-foss-2016b',
> 'Cube/4.3.4-foss-2016a', 'Cube/4.3.4-foss-2016b',
> 'Doxygen/1.8.11-foss-2016b', 'EasyBuild/3.2.1', 'EasyBuild/3.3.1',
> 'EasyBuild/3.5.0', 'Eigen/3.2.9-foss-2016b',
'Eigen/3.2.9-foss-2017a',
> 'FFTW/3.3.4-gompi-2016a', 'FFTW/3.3.4-gompi-2016b',
> 'FFTW/3.3.6-gompi-2017a', 'FFmpeg/3.1.3-foss-2016b',
> 'FLTK/1.3.3-foss-2016a', 'FLTK/1.3.3-foss-2016b',
> 'FLTK/1.3.4-intel-2017a', 'GCC/4.7.2', 'GCC/4.8.4', 'GCC/4.9.2',
> 'GCC/4.9.2-binutils-2.25', 'GCC/4.9.3-2.25',
'GCC/4.9.3-binutils-2.25',
> 'GCC/5.4.0-2.26', 'GCC/6.3.0-2.27', 'GCCcore/4.9.3',
'GCCcore/5.4.0',
> 'GCCcore/5.4.0-foss-2016b', 'GCCcore/6.3.0',
'GDAL/2.1.0-foss-2016b',
> 'GL2PS/1.3.9-foss-2016a', 'GL2PS/1.3.9-foss-2016b',
> 'GL2PS/1.4.0-intel-2017a', 'GLPK/4.58-foss-2016a',
> 'GLPK/4.58-foss-2016b', 'GLPK/4.60-foss-2016b',
'GLPK/4.60-foss-2017a',
> 'GLPK/4.60-intel-2017a', 'GLPK/4.61-intel-2017a',
> 'GLib/2.47.5-foss-2016a', 'GLib/2.47.5-foss-2016b',
> 'GLib/2.49.5-foss-2016b', 'GLib/2.52.0-intel-2017a',
> 'GLib/2.53.5-GCCcore-6.3.0', 'GMP/6.0.0a-GNU-4.9.3-2.25',
> 'GMP/6.1.0-foss-2016a', 'GMP/6.1.0-foss-2016b',
'GMP/6.1.0-foss-2017a',
> 'GMP/6.1.1-foss-2016b', 'GMP/6.1.1-foss-2017a',
'GMP/6.1.1-intel-2017a',
> 'GMP/6.1.2-GCCcore-6.3.0', 'GNU/4.9.3-2.25',
> 'GObject-Introspection/1.47.1-foss-2016a',
> 'GObject-Introspection/1.47.1-foss-2016b',
> 'GObject-Introspection/1.49.1-foss-2016b',
'GTK+/2.24.31-foss-2016b',
> 'Gdk-Pixbuf/2.36.0-foss-2016b', 'Go/1.8.1',
> 'GraphicsMagick/1.3.23-foss-2016a', 'HDF5/1.8.16-foss-2016a-serial',
> 'HDF5/1.8.16-foss-2016b-serial', 'HDF5/1.8.17-foss-2016b',
> 'HDF5/1.8.18-intel-2017a-serial', 'HPCG/2.1-foss-2017a',
> 'HPL/2.2-foss-2017a', 'HarfBuzz/1.1.3-foss-2016a',
> 'HarfBuzz/1.3.1-foss-2016b', 'Iperf/2.0.5-foss-2016b',
> 'JUnit/4.11-Java-1.7.0_21', 'JUnit/4.12-Java-1.8.0_92',
> 'JasPer/1.900.1-foss-2016a', 'JasPer/1.900.1-foss-2016b',
> 'Java/1.7.0_21', 'Java/1.8.0_121', 'Java/1.8.0_121-foss-2016b',
> 'Java/1.8.0_131', 'Java/1.8.0_144-foss-2017a', 'Java/1.8.0_72',
> 'Java/1.8.0_92', 'Java/1.8.0_92-foss-2016b',
'LLVM/3.7.1-foss-2016a',
> 'LLVM/3.7.1-foss-2016b', 'LLVM/3.8.1-foss-2016b',
> 'LLVM/4.0.0-foss-2017a', 'LLVM/4.0.0-intel-2017a',
> 'LibTIFF/4.0.6-foss-2016a', 'LibTIFF/4.0.6-foss-2016b',
'Lua/5.1.4-8',
> 'M4/1.4.17', 'M4/1.4.17-GCC-4.9.2',
'M4/1.4.17-GCC-4.9.3-binutils-2.25',
> 'M4/1.4.17-GCCcore-4.9.3', 'M4/1.4.17-GCCcore-5.4.0',
> 'M4/1.4.17-GNU-4.9.3-2.25', 'M4/1.4.17-foss-2016a',
> 'M4/1.4.17-foss-2016b', 'M4/1.4.17-foss-2017a',
'M4/1.4.17-intel-2017a',
> 'M4/1.4.18', 'M4/1.4.18-GCCcore-6.3.0', 'M4/1.4.18-foss-2016b',
> 'MATLAB/2018b', 'METIS/5.1.0-foss-2016a', 'METIS/5.1.0-foss-2016b',
> 'METIS/5.1.0-foss-2017a', 'METIS/5.1.0-intel-2017a',
> 'MPFR/3.1.4-foss-2016b', 'MPFR/3.1.4-foss-2017a',
> 'Mako/1.0.4-foss-2016b-Python-2.7.12',
> 'Mako/1.0.4-foss-2017a-Python-2.7.13',
> 'Mako/1.0.6-intel-2017a-Python-2.7.13', 'Mesa/11.1.2-foss-2016a',
> 'Mesa/12.0.2-foss-2016b', 'Mesa/17.0.2-intel-2017a',
> 'NASM/2.11.08-foss-2016a', 'NASM/2.11.08-foss-2016b',
> 'NASM/2.12.01-foss-2016a', 'NASM/2.12.01-foss-2017a',
> 'NASM/2.12.02-foss-2016b', 'NASM/2.12.02-foss-2017a',
> 'NASM/2.12.02-intel-2017a', 'NASM/2.13.01-GCCcore-6.3.0',
> 'NLTK/3.2.2-foss-2016a-Python-3.5.1',
> 'NLTK/3.2.2-intel-2017a-Python-2.7.13', 'OPARI2/1.1.2-foss-2017a',
> 'OPARI2/2.0-foss-2016a', 'OPARI2/2.0-foss-2016b',
'OTF2/2.0-foss-2016a',
> 'OTF2/2.0-foss-2016b', 'Octave/4.0.0-foss-2016a',
> 'OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0',
> 'OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1',
> 'OpenBLAS/0.2.19-GCC-6.3.0-2.27-LAPACK-3.7.0',
> 'OpenCV/3.1.0-foss-2016b', 'OpenFOAM/4.0-foss-2016b',
> 'OpenMPI/1.10.2-GCC-4.9.3-2.25', 'OpenMPI/1.10.3-GCC-5.4.0-2.26',
> 'OpenMPI/1.6.4-GCC-4.7.2', 'OpenMPI/2.0.2-GCC-6.3.0-2.27',
> 'OpenSSL/1.0.1p-foss-2017a', 'OpenSSL/1.0.1q-foss-2017a',
> 'OpenSSL/1.0.1s-foss-2016b', 'OpenSSL/1.0.1s-foss-2017a',
> 'OpenSSL/1.0.2h-foss-2017a', 'OpenSSL/1.1.0e-foss-2016b',
> 'PAPI/5.4.3-foss-2016a', 'PAPI/5.4.3-foss-2016b',
> 'PCRE/8.38-foss-2016a', 'PCRE/8.38-foss-2016b',
'PCRE/8.38-foss-2017a',
> 'PCRE/8.39-foss-2016b', 'PCRE/8.39-foss-2017a',
'PCRE/8.39-intel-2017a',
> 'PCRE/8.40-intel-2017a', 'PCRE/8.41-GCCcore-6.3.0',
> 'PDT/3.22-foss-2016a', 'PROJ/4.9.2-foss-2016b',
> 'Pango/1.39.0-foss-2016a', 'Pango/1.40.3-foss-2016b',
> 'ParaView/5.2.0-foss-2016b-mpi',
> 'Pillow/3.2.0-foss-2016a-Python-2.7.11-freetype-2.6.3',
> 'PyCUDA/2016.1.2-intel-2017a-Python-2.7.13',
'Python/2.7.11-foss-2016a',
> 'Python/2.7.11-foss-2016b', 'Python/2.7.12-foss-2016b',
> 'Python/2.7.13-GCCcore-6.3.0-bare', 'Python/2.7.13-foss-2017a',
> 'Python/2.7.13-intel-2017a', 'Python/3.5.1-foss-2016a',
> 'Qhull/2015.2-foss-2016a', 'Qhull/2015.2-foss-2016b',
> 'Qhull/2015.2-foss-2017a', 'Qhull/2015.2-intel-2017a',
> 'Qt/4.8.7-foss-2016a', 'Qt/4.8.7-foss-2016b',
'Qt/4.8.7-intel-2017a',
> 'Qt5/5.8.0-foss-2016b', 'Qt5/5.8.0-intel-2017a',
> 'QuantumESPRESSO/5.4.0-foss-2016b-hybrid',
'SCOTCH/6.0.4-foss-2016b',
> 'SCOTCH/6.0.4-foss-2017a', 'SIONlib/1.6.1-foss-2016a-tools',
> 'SIONlib/1.6.1-foss-2016b-tools', 'SQLite/3.13.0-foss-2016b',
> 'SQLite/3.13.0-foss-2017a', 'SQLite/3.17.0-GCCcore-6.3.0',
> 'SQLite/3.8.10.2-foss-2016b', 'SQLite/3.9.2-foss-2016a',
> 'SQLite/3.9.2-foss-2016b', 'SQLite/3.9.2-foss-2017a',
> 'ScaLAPACK/2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0',
> 'ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1',
> 'ScaLAPACK/2.0.2-gompi-2017a-OpenBLAS-0.2.19-LAPACK-3.7.0',
> 'Szip/2.1-foss-2016a', 'Szip/2.1-foss-2016b', 'Szip/2.1-foss-2017a',
> 'Szip/2.1-intel-2017a', 'Tcl/8.5.12-foss-2016b',
'Tcl/8.6.4-foss-2016a',
> 'Tcl/8.6.4-foss-2016b', 'Tcl/8.6.4-foss-2017a',
'Tcl/8.6.5-foss-2016b',
> 'Tcl/8.6.5-foss-2017a', 'Tcl/8.6.6-GCCcore-6.3.0',
> 'Tensorflow/0.12.1-foss-2016b-Python-2.7.12',
'Tk/8.5.12-foss-2016b',
> 'Tk/8.6.4-foss-2016a-no-X11', 'Tk/8.6.4-foss-2016b-no-X11',
> 'Tk/8.6.4-foss-2017a-no-X11', 'Tk/8.6.5-foss-2016b',
> 'Tk/8.6.5-foss-2017a', 'VTune/2017_update2',
'X11/20160819-foss-2016b',
> 'X11/20160819-foss-2017a', 'X11/20170314-GCCcore-6.3.0',
> 'XZ/5.2.2-foss-2016a', 'XZ/5.2.2-foss-2016b', 'XZ/5.2.2-foss-2017a',
> 'XZ/5.2.2-intel-2017a', 'XZ/5.2.3-GCCcore-6.3.0',
'XZ/5.2.3-foss-2017a',
> 'Yasm/1.3.0-foss-2016b', 'ant/1.9.7-Java-1.8.0_92',
> 'arpack-ng/3.3.0-foss-2016a', 'arpack-ng/3.3.0-foss-2016b',
> 'arpack-ng/3.3.0-foss-2017a', 'arpack-ng/3.4.0-foss-2016b',
> 'arpack-ng/3.4.0-foss-2017a', 'arpack-ng/3.4.0-intel-2017a',
> 'arpack-ng/3.5.0-intel-2017a', 'binutils/2.25',
> 'binutils/2.25-GCC-4.9.3-binutils-2.25',
'binutils/2.25-GCCcore-4.9.3',
> 'binutils/2.26', 'binutils/2.26-GCCcore-5.4.0',
> 'binutils/2.26-foss-2016b', 'binutils/2.27',
> 'binutils/2.27-GCCcore-6.3.0', 'bzip2/1.0.6-GCCcore-6.3.0',
> 'bzip2/1.0.6-foss-2016a', 'bzip2/1.0.6-foss-2016b',
> 'bzip2/1.0.6-foss-2017a', 'bzip2/1.0.6-intel-2017a',
> 'cURL/7.47.0-foss-2016a', 'cURL/7.47.0-foss-2016b',
> 'cURL/7.47.0-foss-2017a', 'cURL/7.49.1-foss-2016b',
> 'cURL/7.52.1-foss-2016b', 'cURL/7.52.1-foss-2017a',
> 'cURL/7.52.1-intel-2017a', 'cURL/7.53.1-GCCcore-6.3.0',
> 'cairo/1.14.6-foss-2016a', 'cairo/1.14.6-foss-2016b',
> 'cairo/1.14.8-intel-2017a', 'cuDNN/6.0-CUDA-8.0.61',
> 'damageproto/1.2.1-foss-2016a', 'damageproto/1.2.1-foss-2016b',
> 'eudev/3.1.5-foss-2016a', 'expat/2.1.0-foss-2016a',
> 'expat/2.1.0-foss-2016b', 'expat/2.2.0-GCCcore-6.3.0',
> 'expat/2.2.0-foss-2016b', 'expat/2.2.0-foss-2017a',
> 'expat/2.2.0-intel-2017a', 'fixesproto/5.0-foss-2016a',
> 'fixesproto/5.0-foss-2016b', 'flex/2.5.39',
> 'flex/2.5.39-GCC-4.9.3-binutils-2.25', 'flex/2.5.39-GCCcore-4.9.3',
> 'flex/2.6.0', 'flex/2.6.0-GCC-4.9.2', 'flex/2.6.0-GCCcore-5.4.0',
> 'flex/2.6.0-foss-2016a', 'flex/2.6.0-foss-2016b',
> 'flex/2.6.0-foss-2017a', 'flex/2.6.3', 'flex/2.6.3-GCCcore-6.3.0',
> 'flex/2.6.3-foss-2016b', 'flex/2.6.4-GCCcore-6.3.0',
> 'fontconfig/2.11.94-foss-2016a', 'fontconfig/2.11.94-foss-2016b',
> 'fontconfig/2.12.1-GCCcore-6.3.0-libpng-1.6.29',
> 'fontconfig/2.12.1-foss-2016b', 'fontconfig/2.12.1-foss-2017a',
> 'fontconfig/2.12.1-intel-2017a', 'fontsproto/2.1.3-foss-2016a',
> 'fontsproto/2.1.3-foss-2016b', 'foss/2016a', 'foss/2016b',
'foss/2017a',
> 'freeglut/3.0.0-foss-2016a', 'freeglut/3.0.0-foss-2016b',
> 'freeglut/3.0.0-intel-2017a', 'freetype/2.6.2-foss-2016a',
> 'freetype/2.6.2-foss-2016b', 'freetype/2.6.3-foss-2016a',
> 'freetype/2.6.5-foss-2016b', 'freetype/2.6.5-foss-2017a',
> 'freetype/2.6.5-intel-2017a', 'freetype/2.7-foss-2016b',
> 'freetype/2.7.1-GCCcore-6.3.0-libpng-1.6.29',
> 'gensim/0.13.2-foss-2016a-Python-2.7.11', 'gettext/0.19.6',
> 'gettext/0.19.6-foss-2016a', 'gettext/0.19.6-foss-2016b',
> 'gettext/0.19.6-foss-2017a', 'gettext/0.19.8',
> 'gettext/0.19.8-foss-2016b', 'gettext/0.19.8-foss-2017a',
> 'gettext/0.19.8.1 <http://0.19.8.1> <http://0.19.8.1>',
'gettext/0.19.8.1-GCCcore-6.3.0',
> 'glproto/1.4.17-foss-2016a', 'gnuplot/5.0.3-foss-2016a',
> 'gnuplot/5.0.5-foss-2016b', 'gompi/1.4.10', 'gompi/2016a',
> 'gompi/2016b', 'gompi/2017a', 'gperf/3.0.4-foss-2016a',
> 'gperf/3.0.4-foss-2017a', 'help2man/1.47.4',
> 'help2man/1.47.4-GCCcore-6.3.0', 'help2man/1.47.4-foss-2016b',
> 'hwloc/1.11.2-GCC-4.9.3-2.25', 'hwloc/1.11.3-GCC-5.4.0-2.26',
> 'hwloc/1.11.5-GCC-6.3.0-2.27', 'hwloc/1.6.2-GCC-4.7.2',
> 'icc/2017.1.132-GCC-6.3.0-2.27',
'iccifort/2017.1.132-GCC-6.3.0-2.27',
> 'ifort/2017.1.132-GCC-6.3.0-2.27', 'iimpi/2017a',
> 'imkl/2017.1.132-iimpi-2017a',
> 'impi/2017.1.132-iccifort-2017.1.132-GCC-6.3.0-2.27',
> 'inputproto/2.3.1-foss-2016a', 'inputproto/2.3.1-foss-2016b',
> 'inputproto/2.3.1-foss-2017a', 'intel/2017a', 'itac/2017.2.028',
> 'kbproto/1.0.7-foss-2016a', 'kbproto/1.0.7-foss-2016b',
> 'kbproto/1.0.7-foss-2017a', 'libGLU/9.0.0-foss-2016a',
> 'libGLU/9.0.0-foss-2016b', 'libGLU/9.0.0-intel-2017a',
> 'libICE/1.0.9-foss-2016a', 'libSM/1.2.2-foss-2016a',
> 'libX11/1.6.3-foss-2016a', 'libX11/1.6.3-foss-2016b',
> 'libXau/1.0.8-foss-2016a', 'libXau/1.0.8-foss-2016b',
> 'libXcursor/1.1.14-foss-2016a', 'libXdamage/1.1.4-foss-2016a',
> 'libXdamage/1.1.4-foss-2016b', 'libXdmcp/1.1.2-foss-2016a',
> 'libXdmcp/1.1.2-foss-2016b', 'libXext/1.3.3-foss-2016a',
> 'libXext/1.3.3-foss-2016b', 'libXfixes/5.0.1-foss-2016a',
> 'libXfixes/5.0.1-foss-2016b', 'libXfont/1.5.1-foss-2016a',
> 'libXfont/1.5.1-foss-2016b', 'libXft/2.3.2-foss-2016a',
> 'libXft/2.3.2-foss-2016b', 'libXi/1.7.6-foss-2016a',
> 'libXinerama/1.1.3-foss-2016a', 'libXmu/1.1.2-foss-2016a',
> 'libXpm/3.5.11-foss-2016a', 'libXrandr/1.5.0-foss-2016a',
> 'libXrender/0.9.9-foss-2016a', 'libXrender/0.9.9-foss-2016b',
> 'libXt/1.1.5-foss-2016a', 'libcerf/1.4-foss-2016a',
> 'libcerf/1.4-foss-2016b', 'libcerf/1.5-foss-2016b',
> 'libcerf/1.5-foss-2017a', 'libcerf/1.5-intel-2017a',
> 'libdrm/2.4.67-foss-2016a', 'libdrm/2.4.67-foss-2016b',
> 'libdrm/2.4.70-foss-2016b', 'libdrm/2.4.70-foss-2017a',
> 'libdrm/2.4.76-intel-2017a', 'libffi/3.2.1-GCCcore-6.3.0',
> 'libffi/3.2.1-foss-2016a', 'libffi/3.2.1-foss-2016b',
> 'libffi/3.2.1-foss-2017a', 'libfontenc/1.1.3-foss-2016a',
> 'libfontenc/1.1.3-foss-2016b', 'libgd/2.1.1-foss-2016a',
> 'libgd/2.1.1-foss-2016b', 'libgd/2.2.3-foss-2016b',
> 'libgd/2.2.3-foss-2017a', 'libgd/2.2.4-intel-2017a',
> 'libjpeg-turbo/1.4.2-foss-2016a',
> 'libjpeg-turbo/1.4.2-foss-2016a-NASM-2.12.01',
> 'libjpeg-turbo/1.4.2-foss-2016b',
> 'libjpeg-turbo/1.4.2-foss-2017a-NASM-2.12.01',
> 'libjpeg-turbo/1.5.0-foss-2016b', 'libjpeg-turbo/1.5.0-foss-2017a',
> 'libjpeg-turbo/1.5.1-intel-2017a',
'libjpeg-turbo/1.5.2-GCCcore-6.3.0',
> 'libpciaccess/0.13.4-foss-2016a', 'libpciaccess/0.13.4-foss-2016b',
> 'libpng/1.6.21-foss-2016a', 'libpng/1.6.21-foss-2016b',
> 'libpng/1.6.21-foss-2017a', 'libpng/1.6.23-foss-2016b',
> 'libpng/1.6.24-foss-2016b', 'libpng/1.6.24-foss-2017a',
> 'libpng/1.6.24-intel-2017a', 'libpng/1.6.26-foss-2016b',
> 'libpng/1.6.29-GCCcore-6.3.0', 'libpthread-stubs/0.3-foss-2016a',
> 'libpthread-stubs/0.3-foss-2016b',
'libpthread-stubs/0.3-foss-2017a',
> 'libreadline/6.3', 'libreadline/6.3-GCCcore-6.3.0',
> 'libreadline/6.3-foss-2016a', 'libreadline/6.3-foss-2016b',
> 'libreadline/6.3-foss-2017a', 'libreadline/6.3-intel-2017a',
> 'libreadline/7.0-GCCcore-6.3.0', 'libtool/2.4.6',
> 'libtool/2.4.6-GCCcore-6.3.0', 'libtool/2.4.6-GNU-4.9.3-2.25',
> 'libtool/2.4.6-foss-2016a', 'libtool/2.4.6-foss-2016b',
> 'libtool/2.4.6-foss-2017a', 'libtool/2.4.6-intel-2017a',
> 'libunwind/1.1-foss-2016a', 'libunwind/1.1-foss-2016b',
> 'libxcb/1.11.1-foss-2016a', 'libxcb/1.11.1-foss-2016b',
> 'libxml2/2.9.3-foss-2016a', 'libxml2/2.9.3-foss-2016b',
> 'libxml2/2.9.3-foss-2017a', 'libxml2/2.9.4-GCCcore-6.3.0',
> 'libxml2/2.9.4-foss-2016b',
'libxml2/2.9.4-foss-2016b-Python-2.7.12',
> 'libxml2/2.9.4-foss-2017a',
'libxml2/2.9.4-foss-2017a-Python-2.7.13',
> 'libxml2/2.9.4-intel-2017a',
'libxml2/2.9.4-intel-2017a-Python-2.7.13',
> 'likwid/4.0.1-GNU-4.9.3-2.25', 'lm-sensors/3.4.0', 'lmod/7.4.17',
> 'makedepend/1.0.5-foss-2016a',
> 'matplotlib/1.5.1-foss-2016a-Python-2.7.11',
> 'matplotlib/1.5.1-foss-2016a-Python-2.7.11-freetype-2.6.3',
> 'matplotlib/1.5.1-foss-2016a-Python-3.5.1',
> 'matplotlib/1.5.3-foss-2016b-Python-2.7.12',
'nano/2.2.6-foss-2016b',
> 'ncurses/5.9-GCC-4.9.2', 'ncurses/5.9-foss-2016b', 'ncurses/6.0',
> 'ncurses/6.0-GCCcore-6.3.0', 'ncurses/6.0-foss-2016a',
> 'ncurses/6.0-foss-2016b', 'ncurses/6.0-foss-2017a',
> 'ncurses/6.0-intel-2017a', 'netCDF/4.4.1-foss-2016b',
> 'nettle/3.2-foss-2016b', 'nettle/3.2-foss-2017a',
> 'nettle/3.2-intel-2017a', 'nettle/3.3-intel-2017a',
> 'networkx/1.11-foss-2016a-Python-2.7.11',
> 'networkx/2.2-foss-2016b-Python-2.7.11', 'nodejs/4.4.7-foss-2016a',
> 'nodejs/6.10.3-foss-2017a', 'ns/2.35-foss-2016b',
> 'numactl/2.0.11-GCC-4.9.3-2.25', 'numactl/2.0.11-GCC-5.4.0-2.26',
> 'numactl/2.0.11-GCC-6.3.0-2.27', 'numactl/2.0.11-foss-2016a',
> 'numpy/1.11.0-foss-2016b-Python-2.7.11', 'otcl/1.14-foss-2016b',
> 'pandas/0.18.0-foss-2016a-Python-3.5.1',
> 'pip/8.1.2-foss-2016b-Python-2.7.12', 'pixman/0.34.0-GCCcore-6.3.0',
> 'pixman/0.34.0-foss-2016a', 'pixman/0.34.0-foss-2016b',
> 'pixman/0.34.0-foss-2017a', 'pkg-config/0.29-foss-2016a',
> 'pkg-config/0.29-foss-2016b', 'pkg-config/0.29.1-GCCcore-6.3.0',
> 'pkg-config/0.29.1-foss-2016b', 'pkg-config/0.29.1-foss-2017a',
> 'pkg-config/0.29.1-intel-2017a', 'pkg-config/0.29.2-intel-2017a',
> 'protobuf-python/3.2.0-foss-2016b-Python-2.7.12',
> 'protobuf/3.2.0-foss-2016b', 'protobuf/3.3.0-foss-2017a',
> 'qrupdate/1.1.2-foss-2016a', 'qrupdate/1.1.2-foss-2016b',
> 'qrupdate/1.1.2-intel-2017a', 'randrproto/1.5.0-foss-2016a',
> 'renderproto/0.11-foss-2016a', 'renderproto/0.11-foss-2016b',
> 'requests/2.10.0-foss-2016a-Python-2.7.11',
> 'scikit-learn/0.17.1-foss-2016a-Python-2.7.11',
> 'scikit-learn/0.17.1-foss-2016a-Python-3.5.1',
> 'scikit-learn/0.18.1-foss-2016b-Python-2.7.12', 'settarg/7.4.17',
> 'stress/1.0.4-foss-2016b', 'supermagic/20170824-foss-2016a',
> 'supermagic/20170824-foss-2017a', 'tclcl/1.20-foss-2016b',
> 'testpath/0.3-foss-2016a-Python-3.5.1',
'util-linux/2.29.2-intel-2017a',
> 'util-linux/2.30.1-GCCcore-6.3.0', 'x264/20160614-foss-2016b',
> 'xcb-proto/1.11', 'xextproto/7.3.0-foss-2016a',
> 'xextproto/7.3.0-foss-2016b', 'xextproto/7.3.0-foss-2017a',
> 'xineramaproto/1.2.1-foss-2016a', 'xorg-macros/1.19.0-foss-2016a',
> 'xorg-macros/1.19.0-foss-2016b', 'xorg-macros/1.19.0-foss-2017a',
> 'xprop/1.2.2-foss-2016a', 'xprop/1.2.2-foss-2016b',
> 'xprop/1.2.2-foss-2017a', 'xprop/1.2.2-intel-2017a',
> 'xproto/7.0.28-foss-2016a', 'xproto/7.0.28-foss-2016b',
> 'xproto/7.0.28-foss-2017a', 'xtrans/1.3.5-foss-2016a',
> 'xtrans/1.3.5-foss-2016b', 'xtrans/1.3.5-foss-2017a', 'zlib/1.2.11',
> 'zlib/1.2.11-GCCcore-6.3.0', 'zlib/1.2.11-foss-2016a',
> 'zlib/1.2.11-foss-2016b', 'zlib/1.2.7-foss-2016b', 'zlib/1.2.8',
> 'zlib/1.2.8-GCC-4.9.3-binutils-2.25', 'zlib/1.2.8-GCC-5.4.0-2.26',
> 'zlib/1.2.8-GCCcore-4.9.3', 'zlib/1.2.8-GCCcore-5.4.0',
> 'zlib/1.2.8-GCCcore-6.3.0', 'zlib/1.2.8-foss-2016a',
> 'zlib/1.2.8-foss-2016b', 'zlib/1.2.8-foss-2017a',
'zlib/1.2.8-intel-2017a']
> == 2019-03-11 00:40:53,148 easyconfig.py:608 DEBUG Dependencies
BEFORE
> filtering: [{'external_module_metadata': {}, 'full_mod_name':
> 'flex/2.6.3', 'toolchain': {'version': '', 'name': 'dummy'}, 'name':
> 'flex', 'dummy': True, 'short_mod_name': 'flex/2.6.3',
> 'external_module': False, 'versionsuffix': '', 'version': '2.6.3',
> 'toolchain_inherited': True, 'hidden': False, 'build_only': True},
> {'external_module_metadata': {}, 'full_mod_name': 'Bison/3.0.4',
> 'toolchain': {'version': '', 'name': 'dummy'}, 'name': 'Bison',
'dummy':
> True, 'short_mod_name': 'Bison/3.0.4', 'external_module': False,
> 'versionsuffix': '', 'version': '3.0.4', 'toolchain_inherited':
True,
> 'hidden': False, 'build_only': True},
{'external_module_metadata': {},
> 'full_mod_name': 'zlib/1.2.11', 'toolchain': {'version': '', 'name':
> 'dummy'}, 'name': 'zlib', 'dummy': True, 'short_mod_name':
> 'zlib/1.2.11', 'external_module': False, 'versionsuffix': '',
'version':
> '1.2.11', 'toolchain_inherited': True, 'hidden': False,
'build_only': True}]
> == 2019-03-11 00:40:53,175 build_log.py:158 ERROR EasyBuild
crashed with
> an error (at
>
easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/vsc_base-2.5.8-py2.7.egg/vsc/utils/exceptions.py:124
> in __init__): Module is already loaded (EBROOTBINUTILS is set),
> installation cannot continue. (at
>
easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_framework-3.5.0-py2.7.egg/easybuild/framework/easyblock.py:1522
> in check_readiness_step)
> == 2019-03-11 00:40:53,175 easyblock.py:2685 WARNING build failed
(first
> 300 chars): Module is already loaded (EBROOTBINUTILS is set),
> installation cannot continue.
> == 2019-03-11 00:40:53,175 easyblock.py:279 INFO Closing log for
> application name binutils version 2.28
>
> Please do help us.
>
> With Regards
>
> Sona
>
>
