You can also add sanity_pip_check=False
to the easyconfig and that should skip that check altogether. That may be something we should consider upstream as well.
On 27-May-25 12:14 PM, Kenneth Hoste wrote:
Hi Loris, On 27/05/2025 11:35, Loris Bennett wrote:Hi Kenneth, Kenneth Hoste <[email protected]> writes:Hi Loris,It seems that “pip check” fails in your default (system) Python environment.Can you confirm that you see the same problem when you run “python3 -m pip check” manually?Yes, I see the same output.As an escape mechanism, you can use “eb --skip-sanity-check”, but you should tread carefully when using that option.In this specific case it may be OK since EasyBuild doesn’t have any requirements except for the easybuild-* Python packages themselves, so you could say that the “pip check” is not that useful when installing EasyBuild.So was 'python3 -m pip check' added to the sanity check in 5.1.0?"pip check" is now enabled by default in the sanity check performed by EasyBuild for all Python packages.When installing EasyBuild 5.0.0, you probably used EasyBuild 4.9.4, so it wasn't enabled yet there. But it is enabled in EasyBuild 5.0.0, which is probably what you were using to install EasyBuild v5.1.0.That explains why this is only popping up now for you.The problems seems to be that the check picks up the .pth /usr/lib64/python3.6/site-packages/zedat.pth which I use to make programs installed on an NFS share available. Thus I seem to have polluted my environment. I'll try to fix that.Yes, indeed, in EasyBuild we assume that "pip check" passes with the standard system Python (or the one used for running EasyBuild).regards, KennethThanks for the help! Cheers, Lorisregards, KennethOn 27 May 2025, at 10:24, Loris Bennett <[email protected]> wrote:Ciao Roberto,Roberto Scipioni <[email protected]> writes:Hi,If I am not mistaken you are using eb 5 with Python 3.6 ? It is a bit of an old version. That may be part of the problem?I am using Python 3.6, but I had no problem updating from 4.9.4 to 5.0.0 onthis system. In any case here https://docs.easybuild.io/python-2-3-compatibility/>>>> it says the following Starting with EasyBuild v5.0, the EasyBuild framework and easyblocks require Python >= 3.6. So the Python version shouldn't be an issue. Cheers, LorisRegards Roberto Yahoo Mail: Search, organise, conquer On Tue, 27 May 2025 at 8:51, Loris Bennett <loris.bennett-j/[email protected]> wrote: Hi Kenneth,Kenneth Hoste <kenneth.hoste-cru1egdzd7c-xmd5yjdbdmrexy1tmh2...@public.gmane.org> writes:Dear EasyBuilders, We're happy to announce the release of EasyBuild v5.1.0 [1].EasyBuild v5.1.0 is primarily a feature release that includes a couple of new features, but it also includes various bug fixes (including for some regressions introduced in EasyBuild v5.0.0), minor enhancements,and support for new software.Thanks for the great work! Unfortunately the installation fails on my system with the following error:== 2025-05-27 09:33:35,330 build_log.py:226 ERROR EasyBuild encountered an error (at easybuild/software/EasyBuild/5.0.0/lib/python3.6/site-packages/easybuild/base/exceptions.py:126in __init__): `/usr/bin/python3.6 -m pip check` failed: usermanager 0.2.1 requires ldap3, which is not installed.usermanager 0.2.1 has requirement importlib_metadata<2.0.0,>=1.7.0, but you have importlib-metadata 4.8.3. grouper-client 0.4.1 has requirement importlib-metadata<2.0,>=1.0; python_version < "3.8", but you have importlib-metadata 4.8.3. generate-publications-csv 1.7.2 requires bibtexparser, which is not installed.generate-publications-csv 1.7.2 has requirement importlib-metadata<2.0,>=1.0; python_version < "3.8", but you have importlib-metadata 4.8.3. doi2bib 0.4.0 requires future, which is not installed. doi2bib 0.4.0 requires bibtexparser, which is not installed.The programs referred to, such as 'usermanager' are all packages I have written myself and installed in a non-standard path via wheels created with Poetry. The packages have been all around for several years duringwhich time I have updated EasyBuild without any issues. Any idea what might be going wrong? [snip (150 lines)] Cheers, Loris -- Dr. Loris Bennett (Herr/Mr) FUB-IT, Freie Universität Berlin-- Dr. Loris Bennett (Herr/Mr) FUB-IT, Freie Universität Berlin
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