AFAICS, `desktop-save' already saves all active minor-modes except
those listed in `desktop-minor-mode-table', which get special
processing. The ones listed above are ones that should need a special
processing because they're not normal minor modes (there's no
`indent-tabs-mode' function, for example).
As you can see, I don't know much about desktop.el--I don't use it.
If you see that a certain mode needs special processing,
please just implement that.
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