Hello EMBOSS team, I've just been using dottup to produce dot plots comparing two nucleotide sequences (two assemblies), where I have regions of very high similarity but some inversions. http://emboss.sourceforge.net/apps/release/6.2/emboss/apps/dottup.html
I've noticed that I can tell dotplot to reverse either of the sequences, but I would actually like it to search both for forward matches AND reverse matches to display on the same plot (ideally using different colours). Is this possible already, or might it be a reasonable feature request? Right now I can generate one plot with the forward matches, and a second plot with the reverse matches - not ideal. Thanks, Peter C. P.S. While I'm asking, I'd also like (colour) PDF output, since working with PDF files is much easier on the Mac than postscript (which thankfully is trivial to convert into PDF - so this isn't a big issue for me). _______________________________________________ EMBOSS mailing list EMBOSS@lists.open-bio.org http://lists.open-bio.org/mailman/listinfo/emboss