I'll check into this. We run the standard VS-FTPD server on the box but it has not been updated in a while.

We also use an upstream Juniper SSG-series firewall and intrusion detection system and sometimes it gets messed up and affects individual TCP sessions. A reboot of the firewall usually clears things up.

Given the problems with options maybe it is the vs-ftpd configuration though. I'll give it a look.

-Chris



Hamish McWilliam wrote:
Hi Chris,

I'm also seeing problems with the FTP site, but using Mirror rather
than Transmit, it looks like the server does not like options being
specified to the LIST command:

Scanning remote directory /pub/EMBOSS
--->  CWD /pub/EMBOSS
250 Directory successfully changed.
--->  TYPE A
200 Switching to ASCII mode.
--->  PORT 172,21,22,1,171,245
200 PORT command successful. Consider using PASV.
--->  PASV
227 Entering Passive Mode (208,94,50,58,104,178)
--->  LIST -lat
timed out
Cannot get remote directory listing because: timed out
Cannot get remote directory details (/pub/EMBOSS)
disconnecting from emboss.open-bio.org

Trying it with a command line client I get the response to hang if I
try using any options to ls or dir, without options they are fine.

All the best,

Hamish

On 29 May 2010 03:44, Koen van der Drift<koenvanderdr...@gmail.com>  wrote:
Hi Chris,

Did you have a chance to look at this? Just tried again, and Transmit still
won't let me access the emboss ftp site.

Thanks,

- Koen.


On Apr 23, 2010, at 11:44 AM, Chris Dagdigian wrote:

In the last few months the open-bio.org servers switched datacenters, IP
addresses and firewall/IDS appliances. Lots of juicy things to look at and
debug.

Koen - if you have a chance can you send me the IP address that you are
using to connect from? I might be able to find some relevant log entries
with that info.

-Chris



Koen van der Drift wrote:
Just for the record, it used to work with Transmit, this is only from
the last few months.

- Koen.

On Thu, Apr 22, 2010 at 7:28 PM, Chris Dagdigian<d...@sonsorol.org>
  wrote:
Might be an issue with the Juniper Netscreen firewall/IDS security
appliance
that sits upstream of the EMBOSS FTP server. I'll take a look at the
security logs and alerts.

-Chris


Koen van der Drift wrote:
Hi,

For a while now I am unable to access the emboss ftp site using the OS
X
client Transmit. Loggin in works fine, but it chokes on the LIST
command. I have no problems accessing it from the command line. I have
added the output from Transmit below. I don't know if this is a
Transmit
or emboss issue, but just wanted to let you know.

Thanks,

- Koen.


Transmit 3.6.9 Session Transcript
LibNcFTP 3.2.1 (August 13, 2007) compiled for UNIX
Uname: Darwin|exile.local|9.8.0|Darwin Kernel Version 9.8.0: Wed Jul 15
16:57:01 PDT 2009; root:xnu-1228.15.4~1/RELEASE_PPC|Power Macintosh
220: (vsFTPd 2.0.1)
Connected to emboss.open-bio.org.
Cmd: USER anonymous
331: Please specify the password.
Cmd: PASS NcFTP@
230: Login successful.
Cmd: TYPE A
200: Switching to ASCII mode.
Logged in to emboss.open-bio.org as anonymous.
Cmd: SYST
215: UNIX Type: L8
Cmd: PWD
257: "/"
Cmd: CWD /pub/EMBOSS/fixes
250: Directory successfully changed.
Cmd: PWD
257: "/pub/EMBOSS/fixes"
Cmd: PASV
227: Entering Passive Mode (208,94,50,58,83,232)
Cmd: LIST -a
Could not read reply from control connection -- timed out. (SReadline
1)
220: (vsFTPd 2.0.1)
Connected to emboss.open-bio.org.
Cmd: USER anonymous
331: Please specify the password.
Cmd: PASS NcFTP@
230: Login successful.
Logged in to emboss.open-bio.org as anonymous.
Cmd: SYST
215: UNIX Type: L8
Cmd: PWD
257: "/"
Cmd: CWD /pub/EMBOSS/fixes
250: Directory successfully changed.
Cmd: PWD
257: "/pub/EMBOSS/fixes"
Cmd: PASV
227: Entering Passive Mode (208,94,50,58,222,100)
Cmd: LIST -a
Could not read reply from control connection -- timed out. (SReadline
1)

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