Hello EMBOSS-folk. Given a set of fasta files, each an ordered list of coding sequences for a set of highly homologous (viral) genomes, is there some straightforward way of generating a file with alignments of the coding sequences other than doing each one manually (around a 100 genes).
That is, if each file is of the form: >gene1 ATG... ...TAG >gene2 ATG... ...TAA etc.... I want to align each set of homologous genes. I've used matcher and needle to do a gene at a time, but it would be nice to batch this. thanks, Robin Colgrove Harvard Medical School PS: Embarrassingly enough, I am using v3.0.0 of emboss (Mac OS X 10.6.5). Can I just install a new version or do I have to uninstall everything first? Looking for the minimum fuss route. _______________________________________________ EMBOSS mailing list EMBOSS@lists.open-bio.org http://lists.open-bio.org/mailman/listinfo/emboss
