Assume your encfs mounting command is
encfs rootdir mountpoint
Could you please explain which directory tree you renamed files in?
Your problem should not happen if you move or rename files inside the mounted 
encfs 
filesystem (under mountpoint). But if you move or rename files under rootdir 
you will have 
this problem. If this is what you have done, the only way to recover the files 
is to 
reverse the moving and renaming. If you change them back to their original 
names and 
directories they should be visible.

On Mon, 31 Oct 2011 04:20:00 am kapetr wrote:
> Hello,
> 
> I use encfs as "normal" user - just ones created and then just
> mount/unmout - no games with passwords, no use of  encfsctl, no
> other encfs filesystems, nothing. All the time just one encfs FS
> with the just one password on the same Ubuntu version (10.10) - no
> access from elsewhere, ...
> 
> Ones I have renamed some directories on mounted encfs and move files
> and dirs, add files, ... (just normal operations).
> But after some next boots I have find out, that some dirs are empty
> and the files are invisible (in decrypted form).
> 
> (also I thing no crasches - and even if - It could not affect so
> many files at time)
> 
> But in encrypted directory the files are there - but in parent
> directory, but not visible in decrypted form.
> 
> I have also try to make 2 test dirs "encr" and "decr". In encr I had
> copy some files from (sub)dirs which are OK + some of the invisible
> ones. After mounting the first ones are OK and the second still not.
> 
> WHAT could happen ?
> Why are some files at once invisible ?
> 
> Is there some log file to see whats wrong ?
> e.g. why encfs do not try to decode this files ? Why ignores them ?
> 
> 
> It is possible to get some info from the invisible encrypted file ?
> - e.g. algoritmus used, key size, ..., key signature, ... ?
> 
> Maybe is just the filename damaged - is it not possible to  get back
> at least content ?
> 
> I had use encfs for backup of sensitive important files - AND NOW
> THEY ARE GONE!
> 
> Please HELP. Thanks all.
> 
> --kapetr

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