Hi Prof. Standish

Thanks so much for the offer. I actually hunted the paper down from a link in 
the original springer resource you posted. Some of it flies over my head, but 
not all of it, so I'll persevere...

"ISTM that you are implicitly assuming that these replicating
hypercycles only emerged once, whereas I would think that replicating
RNA probably arose many times quite easily when life wasn't around to
gobble them up."

Not really, but re-reading your original post I'm actually quite persuaded by 
the idea that even if these replicating mechanisms emerged very rarely it would 
be possible and enough to invoke the anthropic principle. After all, it only 
had to emerge once in the whole universe for these questions to get asked...

Whats niggling me though is something else. Dawkins sometimes intimates that 
the current code was something that itself evolved from low to high fidelity. 
For reasons I've made I can't see how that can be so. Evolution is a process 
where beneficial but random changes accumulate and are passed on through 
successive generations. But if a random mutation in the code results in 
catastrophe as Dawkins acknowledges then that can't happen.

This is to say that if the code evolved then that evolution could not be 
Darwinian in nature.

I find it reassuring that there is research underway addressing this issue. I 
found this paper over my lunch break:

http://www.pnas.org/content/103/28/10696.full

They emphasize ambiguity over error in early coding mechanisms and suggest a 
kind of Lamarkian evolutionary dynamic that existed prior to and eventually 
gave way to Darwinian evolutionary dynamics. Horizontal vs. vertical heredity 
etc. In many ways that might be seen as heresy by the biological community but 
laymen like me don't mind a little heresy here and there. We don't know any 
better. :)

Anyway, it seems to offer the following response to Statham. His argument is 
underpinned by the assumption that all evolution is Darwinian. If one sheds 
that assumption then the code could evolve without the consequent catastrophe.

All the best.

> Date: Wed, 7 Aug 2013 14:02:33 +1000
> From: li...@hpcoders.com.au
> To: everything-list@googlegroups.com
> Subject: Re: Serious proof of why the theory of evolution is wrong
> 
> Hi Chris,
> 
> You can probably find all that you need here
> http://physis.sourceforge.net/
> 
> It looks like it is a defunct research programme, but maybe you could
> follow up citations.
> 
> I could probably dig out an e-copy of the ECAL paper from my
> institution's Springerlink subscription, if you're really interested.
> 
> Further comments interspersed
> 
> On Wed, Aug 07, 2013 at 01:03:36AM +0000, chris peck wrote:
> > 
> > 
> > Hi Prof. Standish
> > 
> > Unfortunately my subscription to Athens ran out a long time ago and I don't 
> > have access to the paper you mention.
> > 
> > I'm still not sure you've addressed the crux of the argument. Lets say you 
> > have a bunch of codons that when processed by a replicating mechanism spit 
> > out a bunch of amino acids. Lets say the replicating system isn't optimized 
> > and has low redundancy so that
> > 
> > codonA -> aa1
> > codonB -> aa2
> > codonC -> aa3
> > 
> > Now there is a random mutation in the mechanism that ought to offer some 
> > redundancy:
> > 
> > codonA -> aa1
> > codonB -> aa1
> > codonC -> aa2
> > codonD -> aa3
> > 
> > Unless there has been a concomitant mutation in the DNA strands the
> mechanism will process, this 'optimization' is in fact catastrophic. 
> 
> That is what I was referring to as the boundary being unstable. The
> two schema cannot coexist at the same location. What I had in mind was
> that they existed contemporaneously, but in different physical
> locations - eg different rock pools perhaps.
> 
> ISTM that you are implictly assuming that these replicating
> hypercycles only emerged once, whereas I would think that replicating
> RNA probably arose many times quite easily when life wasn't around to
> gobble them up.
> 
> 
> -- 
> 
> ----------------------------------------------------------------------------
> Prof Russell Standish                  Phone 0425 253119 (mobile)
> Principal, High Performance Coders
> Visiting Professor of Mathematics      hpco...@hpcoders.com.au
> University of New South Wales          http://www.hpcoders.com.au
> ----------------------------------------------------------------------------
> 
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