I am switching from version 5.1 to 5.5 on OSX my config is working fine using 
5.1 but I get the following error when I change over to 5.5.
I have verified mysql5.5 is working using phpmyadmin, the fedora database and 
tables have been transferred with the same collation.
Tomcat does launch as I have gsearch 2.2 installed it works fine.

ERROR 2012-07-27 10:35:14.833 [main] (Server) Module 
(org.fcrepo.server.storage.DOManager) failed to initialize
org.fcrepo.server.errors.ModuleInitializationException: Error while attempting 
to check for and create non-existing table(s): 
org.apache.commons.dbcp.SQLNestedException: Cannot create 
PoolableConnectionFactory (Communications link failure
...

Fedora 3.4.2 using built in Tomcat
OSX 10.8 (Yes, Mountain Lion)

Could it be the com.mysql.jdbc.Driver or is it another config parameter I need 
to change in fedora.fcfg?
I assume 3.4.2 has been tested with MySQL 5.5...

Any help much appreciated...

Stuart Chalk, Ph.D.
Associate Professor of Chemistry
Department of Chemistry, Building 50, Room 3514,
University of North Florida
1 UNF Drive, Jacksonville, FL 32224 USA
P: 904-620-1938
F: 904-620-3535
E: [email protected]<mailto:[email protected]>
W: http://www.unf.edu/coas/chemistry/

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