Ed

Thanks for the suggestion.  After a lot of research and testing I found that I 
had two installations of MySQL and things were not loading from where I 
expected - so I have now fixed the problem.  However, I will take your 
suggestion and get the most recent version of the driver anyway because of the 
age of the current one.

Stuart

On Aug 7, 2012, at 10:39 PM, Edwin Shin wrote:

> Stuart,
> 
> Can you try swapping in a new MySQL driver? The MySQL driver that shipped w/ 
> 3.4.2 is circa 2008 so that very well may be the problem. You'll find the 
> driver in $CATALINA_HOME/webapps/fedora/WEB-INF/lib/
> 
> Eddie
> 
> 
> On Jul 27, 2012, at 11:22 PM, "Chalk, Stuart" <[email protected]> wrote:
> 
>> I am switching from version 5.1 to 5.5 on OSX my config is working fine 
>> using 5.1 but I get the following error when I change over to 5.5.
>> I have verified mysql5.5 is working using phpmyadmin, the fedora database 
>> and tables have been transferred with the same collation.
>> Tomcat does launch as I have gsearch 2.2 installed it works fine.
>> 
>> ERROR 2012-07-27 10:35:14.833 [main] (Server) Module 
>> (org.fcrepo.server.storage.DOManager) failed to initialize
>> org.fcrepo.server.errors.ModuleInitializationException: Error while 
>> attempting to check for and create non-existing table(s): 
>> org.apache.commons.dbcp.SQLNestedException: Cannot create 
>> PoolableConnectionFactory (Communications link failure
>> ...
>> 
>> Fedora 3.4.2 using built in Tomcat 
>> OSX 10.8 (Yes, Mountain Lion)
>> 
>> Could it be the com.mysql.jdbc.Driver or is it another config parameter I 
>> need to change in fedora.fcfg?
>> I assume 3.4.2 has been tested with MySQL 5.5...
>> 
>> Any help much appreciated...
>> 
>> Stuart Chalk, Ph.D.
>> Associate Professor of Chemistry
>> Department of Chemistry, Building 50, Room 3514,
>> University of North Florida
>> 1 UNF Drive, Jacksonville, FL 32224 USA
>> P: 904-620-1938
>> F: 904-620-3535
>> E: [email protected]
>> W: http://www.unf.edu/coas/chemistry/
>> 
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> 
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