Hi all,
I am in the process to upgrade from Fedora 3.3.1 to 3.6.2
I just noticed that after enabling journaling the fedora-rebuild.sh script
won't work anymore.
Basically in fedora.fcfg I added the relevant section for normal mode as
described here
https://wiki.duraspace.org/display/FEDORA36/Journaling#Journaling-impl-config
When starting the fedora web applications everything looks fine but, when
stopping it and running fedora-rebuild.sh I get a Error creating bean
with name 'org.fcrepo.server.security.Authorization': Bean definition is
abstract.
This suggest to me that enabling journaling, introduces more spring beans
behind the scenes but I have not been able to figure out where or how,
enabling DEBUG logging for springframework in logback.xml shows that it is
loading beans from the standard locations in server/conf/spring but it does
not reveal much detail about the other locations where it is loadging beans
from.
This is a snippet:
************************************************************************
DEBUG (DefaultBeanDefinitionDocumentReader) Loading bean definitions
DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name' specified
- using generated bean name
[org.fcrepo.server.security.AuthorizationConfiguration$created#546ce79d]
DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name' specified
- using generated bean name
[org.fcrepo.server.security.AuthorizationConfiguration$created#42dd8bec]
DEBUG (DefaultNamespaceHandlerResolver) Loaded NamespaceHandler mappings: {
http://www.springframework.org/schema/task=org.springframework.scheduling.config.TaskNamespaceHandler,
http://activemq.apache.org/schema/core=org.apache.xbean.spring.context.v2.XBeanNamespaceHandler,
http://www.springframework.org/schema/p=org.springframework.beans.factory.xml.SimplePropertyNamespaceHandler,
http://www.w3.org/2006/07/ws-policy=org.apache.cxf.ws.policy.spring.PolicyNamespaceHandler,
http://www.springframework.org/schema/lang=org.springframework.scripting.config.LangNamespaceHandler,
http://www.springframework.org/schema/util=org.springframework.beans.factory.xml.UtilNamespaceHandler,
http://cxf.apache.org/jaxws=org.apache.cxf.jaxws.spring.NamespaceHandler,
http://cxf.apache.org/policy=org.apache.cxf.ws.policy.spring.NamespaceHandler,
http://www.springframework.org/schema/jee=org.springframework.ejb.config.JeeNamespaceHandler,
http://cxf.apache.org/transports/http/configuration=org.apache.cxf.transport.http.spring.NamespaceHandler,
http://www.springframework.org/schema/tx=org.springframework.transaction.config.TxNamespaceHandler,
http://cxf.apache.org/ws/addressing=org.apache.cxf.ws.addressing.spring.NamespaceHandler,
http://cxf.apache.org/simple=org.apache.cxf.frontend.spring.NamespaceHandler,
http://www.springframework.org/schema/aop=org.springframework.aop.config.AopNamespaceHandler,
http://www.springframework.org/schema/context=org.springframework.context.config.ContextNamespaceHandler,
http://cxf.apache.org/core=org.apache.cxf.bus.spring.NamespaceHandler,
http://cxf.apache.org/jaxrs=org.apache.cxf.jaxrs.spring.NamespaceHandler,
http://www.springframework.org/schema/security=org.springframework.security.config.SecurityNamespaceHandler,
http://schemas.xmlsoap.org/ws/2004/09/policy=org.apache.cxf.ws.policy.spring.PolicyNamespaceHandler,
http://www.w3.org/ns/ws-policy=org.apache.cxf.ws.policy.spring.PolicyNamespaceHandler,
http://cxf.apache.org/bindings/soap=org.apache.cxf.binding.soap.spring.NamespaceHandler
}
DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name' specified
- using generated bean name [org.fcrepo.server.config.Parameter#245a690]
DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name' specified
- using generated bean name [org.fcrepo.server.config.Parameter#2aba391a]
DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name' specified
- using generated bean name [org.fcrepo.server.config.Parameter#27faefe0]
DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name' specified
- using generated bean name [org.fcrepo.server.config.Parameter#4b9a6fa1]
DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name' specified
- using generated bean name [org.fcrepo.server.config.Parameter#816d9ce]
DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name' specified
- using generated bean name [org.fcrepo.server.config.Parameter#14356788]
DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name' specified
- using generated bean name [org.fcrepo.server.config.Parameter#3e201c15]
DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name' specified
- using generated bean name [org.fcrepo.server.config.Parameter#2e13c690]
DEBUG (BeanDefinitionParserDelegate) Using generated bean name
[util:list#14512f92] for nested custom element 'util:list'
DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name' specified
- using generated bean name
[org.fcrepo.server.security.impl.SimplePolicyLoader#4a5844db]
INFO (XmlBeanDefinitionReader) Loading XML bean definitions from file
[/opt/fedora/fedora-3.6/server/config/spring/doobjectvalidator.xml]
DEBUG (DefaultDocumentLoader) Using JAXP provider
[org.apache.xerces.jaxp.DocumentBuilderFactoryImpl]
DEBUG (PluggableSchemaResolver) Found XML schema [
http://www.springframework.org/schema/beans/spring-beans-3.0.xsd] in
classpath: org/springframework/beans/factory/xml/spring-beans-3.0.xsd
DEBUG (DefaultBeanDefinitionDocumentReader) Loading bean definitions
DEBUG (BeanDefinitionParserDelegate) No XML 'id' specified - using
'org.fcrepo.server.validation.DOObjectValidator' as bean name and [] as
aliases
INFO (XmlBeanDefinitionReader) Loading XML bean definitions from file
[/opt/fedora/fedora-3.6/server/config/spring/triple-generator.xml]
DEBUG (DefaultDocumentLoader) Using JAXP provider
[org.apache.xerces.jaxp.DocumentBuilderFactoryImpl]
DEBUG (PluggableSchemaResolver) Found XML schema [
http://www.springframework.org/schema/beans/spring-beans-3.0.xsd] in
classpath: org/springframework/beans/factory/xml/spring-beans-3.0.xsd
DEBUG (DefaultBeanDefinitionDocumentReader) Loading bean definitions
INFO (GenericApplicationContext) Refreshing
org.springframework.context.support.GenericApplicationContext@3e0d6c32:
startup date [Thu Jul 18 11:20:35 EST 2013]; parent:
org.springframework.context.support.GenericApplicationContext@42e50215
DEBUG (GenericApplicationContext) Bean factory for
org.springframework.context.support.GenericApplicationContext@3e0d6c32:
org.springframework.beans.factory.support.DefaultListableBeanFactory@50e68513:
defining beans
[org.springframework.context.annotation.CommonAnnotationBeanPostProcessor,org.fcrepo.server.security.ContextRegistry,org.fcrepo.server.security.Authorization,org.fcrepo.server.security.AuthorizationConfiguration,policyFinderModules,org.fcrepo.server.security.ContextAttributeFinderModule,org.fcrepo.server.security.ResourceAttributeFinderModule,attributeFinderModules,resourceFinderModules,PDPConfigurationFactory,LegacyPDPConfig,org.fcrepo.server.security.PolicyEnforcementPoint,org.fcrepo.server.validation.DOObjectValidator,org.trippi.io.TripleIteratorFactory,Object-3.0,ContentModel-3.0,ServiceDefinition-3.0,ServiceDeployment-3.0,org.fcrepo.server.resourceIndex.TripleGenerator,org.fcrepo.server.resourceIndex.ModelBasedTripleGenerator,localMySQLPool,localDerbyPool,localOraclePool,localPostgreSQLPool,localMulgaraTriplestore,localPostgresMPTTriplestore,apimUpdateMessages,apimAccessMessages,org.fcrepo.server.storage.lowlevel.ILowlevelStorage,org.fcrepo.server.storage.lowlevel.ILowlevelStorageConfiguration,org.fcrepo.server.security.BackendSecurity,org.fcrepo.server.security.BackendSecurityConfiguration,org.fcrepo.server.storage.DOManager,org.fcrepo.server.storage.DOManagerConfiguration,org.fcrepo.server.management.Management,org.fcrepo.server.management.ManagementConfiguration,org.fcrepo.server.management.ManagementDelegate,org.fcrepo.server.management.ManagementDelegateConfiguration,org.fcrepo.server.access.Access,org.fcrepo.server.access.AccessConfiguration,org.fcrepo.server.access.DynamicAccess,org.fcrepo.server.access.DynamicAccessConfiguration,org.fcrepo.server.search.FieldSearch,org.fcrepo.server.search.FieldSearchConfiguration,org.fcrepo.server.resourceIndex.ResourceIndex,org.fcrepo.server.resourceIndex.ResourceIndexConfiguration,org.fcrepo.oai.OAIProvider,org.fcrepo.oai.OAIProviderConfiguration,org.fcrepo.server.storage.translation.DOTranslator,org.fcrepo.server.storage.translation.DOTranslatorConfiguration,org.fcrepo.server.management.PIDGenerator,org.fcrepo.server.management.PIDGeneratorConfiguration,org.fcrepo.server.messaging.Messaging,org.fcrepo.server.messaging.MessagingConfiguration,org.fcrepo.server.storage.ConnectionPoolManager,org.fcrepo.server.storage.ConnectionPoolManagerConfiguration,org.fcrepo.server.validation.DOValidator,org.fcrepo.server.validation.DOValidatorConfiguration,org.fcrepo.server.storage.ExternalContentManager,org.fcrepo.server.storage.ExternalContentManagerConfiguration,org.trippi.TriplestoreConnector,org.fcrepo.server.resourceIndex.ResourceIndexRebuilder,org.fcrepo.server.utilities.rebuild.SQLRebuilder];
parent:
org.springframework.beans.factory.support.DefaultListableBeanFactory@7795c14c
DEBUG (DefaultListableBeanFactory) Creating shared instance of singleton
bean
'org.springframework.context.annotation.CommonAnnotationBeanPostProcessor'
****************************************************
And here below is the output when running fedora-rebuild.sh with the
default logback.xml config.
Has anyone come across this? Any suggestion to fix it?
Thanks,
Javier
************************************************************
javier@genesis-cl:/opt/fedora/fedora-3.6/server/bin$ ./fedora-rebuild.sh
Fedora Rebuild Utility
..........................
WARNING: Live rebuilds are not currently supported.
Make sure your server is stopped before continuing.
Server directory is /opt/fedora/fedora-3.6/server
---------------------------------------------------------------------
ERROR (Server) Fatal error while starting server
org.springframework.beans.factory.BeanIsAbstractException: Error creating
bean with name 'org.fcrepo.server.security.Authorization': Bean definition
is abstract
at
org.springframework.beans.factory.support.AbstractBeanFactory.checkMergedBeanDefinition(AbstractBeanFactory.java:1208)
~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE]
at
org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:277)
~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE]
at
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:196)
~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE]
at
org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1079)
~[spring-context-3.0.7.RELEASE.jar:3.0.7.RELEASE]
at org.fcrepo.server.Server.getBean(Server.java:1684)
~[fcrepo-server-3.6.2.jar:na]
at
org.fcrepo.server.management.ManagementModule.postInitModule(ManagementModule.java:180)
~[fcrepo-server-3.6.2.jar:na]
at org.fcrepo.server.Server.init(Server.java:655)
~[fcrepo-server-3.6.2.jar:na]
at
org.fcrepo.server.utilities.rebuild.RebuildServer.getRebuildInstance(RebuildServer.java:164)
~[fcrepo-server-3.6.2.jar:na]
at
org.fcrepo.server.utilities.rebuild.Rebuild.getServer(Rebuild.java:206)
~[fcrepo-server-3.6.2.jar:na]
at
org.fcrepo.server.utilities.rebuild.Rebuild.getRebuilder(Rebuild.java:268)
~[fcrepo-server-3.6.2.jar:na]
at
org.fcrepo.server.utilities.rebuild.Rebuild.main(Rebuild.java:450)
~[fcrepo-server-3.6.2.jar:na]
Error: Fatal error while starting server
java.lang.RuntimeException: Fatal error while starting server
at org.fcrepo.server.Server.init(Server.java:695)
at
org.fcrepo.server.utilities.rebuild.RebuildServer.getRebuildInstance(RebuildServer.java:164)
at
org.fcrepo.server.utilities.rebuild.Rebuild.getServer(Rebuild.java:206)
at
org.fcrepo.server.utilities.rebuild.Rebuild.getRebuilder(Rebuild.java:268)
at
org.fcrepo.server.utilities.rebuild.Rebuild.main(Rebuild.java:450)
Caused by: org.springframework.beans.factory.BeanIsAbstractException: Error
creating bean with name 'org.fcrepo.server.security.Authorization': Bean
definition is abstract
at
org.springframework.beans.factory.support.AbstractBeanFactory.checkMergedBeanDefinition(AbstractBeanFactory.java:1208)
at
org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:277)
at
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:196)
at
org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1079)
at org.fcrepo.server.Server.getBean(Server.java:1684)
at
org.fcrepo.server.management.ManagementModule.postInitModule(ManagementModule.java:180)
at org.fcrepo.server.Server.init(Server.java:655)
... 4 more
ERROR (Server) Fatal error while starting server
org.springframework.beans.factory.BeanIsAbstractException: Error creating
bean with name 'org.fcrepo.server.security.Authorization': Bean definition
is abstract
at
org.springframework.beans.factory.support.AbstractBeanFactory.checkMergedBeanDefinition(AbstractBeanFactory.java:1208)
~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE]
at
org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:277)
~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE]
at
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:196)
~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE]
at
org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1079)
~[spring-context-3.0.7.RELEASE.jar:3.0.7.RELEASE]
at org.fcrepo.server.Server.getBean(Server.java:1684)
~[fcrepo-server-3.6.2.jar:na]
at
org.fcrepo.server.management.ManagementModule.postInitModule(ManagementModule.java:180)
~[fcrepo-server-3.6.2.jar:na]
at org.fcrepo.server.Server.init(Server.java:655)
~[fcrepo-server-3.6.2.jar:na]
at
org.fcrepo.server.utilities.rebuild.RebuildServer.getRebuildInstance(RebuildServer.java:164)
~[fcrepo-server-3.6.2.jar:na]
at
org.fcrepo.server.utilities.rebuild.Rebuild.getServer(Rebuild.java:206)
~[fcrepo-server-3.6.2.jar:na]
at
org.fcrepo.server.utilities.rebuild.Rebuild.main(Rebuild.java:463)
~[fcrepo-server-3.6.2.jar:na]
Server shutdown error: java.lang.RuntimeException: Fatal error while
starting server
********************************************************************************
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