Javier:
Could you please attach your .fcfg file for the server in error?
Thanks,
Ben
On Thu, Jul 18, 2013 at 12:23 PM, Benjamin Armintor <[email protected]>wrote:
> Javier:
> Thanks for this report, too! I've stubbed out an issue to track this
> problem at https://jira.duraspace.org/browse/FCREPO-1194. We will try to
> confirm this one as well, and fix for 3.7 if necessary.
>
> - Ben
>
>
> On Wed, Jul 17, 2013 at 9:28 PM, Javier Molina <
> [email protected]> wrote:
>
>> Hi all,
>>
>> I am in the process to upgrade from Fedora 3.3.1 to 3.6.2
>>
>> I just noticed that after enabling journaling the fedora-rebuild.sh
>> script won't work anymore.
>>
>>
>> Basically in fedora.fcfg I added the relevant section for normal mode as
>> described here
>> https://wiki.duraspace.org/display/FEDORA36/Journaling#Journaling-impl-config
>>
>> When starting the fedora web applications everything looks fine but, when
>> stopping it and running fedora-rebuild.sh I get a Error creating bean
>> with name 'org.fcrepo.server.security.Authorization': Bean definition is
>> abstract.
>>
>>
>> This suggest to me that enabling journaling, introduces more spring beans
>> behind the scenes but I have not been able to figure out where or how,
>> enabling DEBUG logging for springframework in logback.xml shows that it is
>> loading beans from the standard locations in server/conf/spring but it does
>> not reveal much detail about the other locations where it is loadging beans
>> from.
>>
>> This is a snippet:
>>
>> ************************************************************************
>> DEBUG (DefaultBeanDefinitionDocumentReader) Loading bean definitions
>> DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name'
>> specified - using generated bean name
>> [org.fcrepo.server.security.AuthorizationConfiguration$created#546ce79d]
>> DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name'
>> specified - using generated bean name
>> [org.fcrepo.server.security.AuthorizationConfiguration$created#42dd8bec]
>> DEBUG (DefaultNamespaceHandlerResolver) Loaded NamespaceHandler mappings:
>> {
>> http://www.springframework.org/schema/task=org.springframework.scheduling.config.TaskNamespaceHandler,
>>
>> http://activemq.apache.org/schema/core=org.apache.xbean.spring.context.v2.XBeanNamespaceHandler,
>>
>> http://www.springframework.org/schema/p=org.springframework.beans.factory.xml.SimplePropertyNamespaceHandler,
>>
>> http://www.w3.org/2006/07/ws-policy=org.apache.cxf.ws.policy.spring.PolicyNamespaceHandler,
>>
>> http://www.springframework.org/schema/lang=org.springframework.scripting.config.LangNamespaceHandler,
>>
>> http://www.springframework.org/schema/util=org.springframework.beans.factory.xml.UtilNamespaceHandler,
>> http://cxf.apache.org/jaxws=org.apache.cxf.jaxws.spring.NamespaceHandler,
>>
>> http://cxf.apache.org/policy=org.apache.cxf.ws.policy.spring.NamespaceHandler,
>>
>> http://www.springframework.org/schema/jee=org.springframework.ejb.config.JeeNamespaceHandler,
>>
>> http://cxf.apache.org/transports/http/configuration=org.apache.cxf.transport.http.spring.NamespaceHandler,
>>
>> http://www.springframework.org/schema/tx=org.springframework.transaction.config.TxNamespaceHandler,
>>
>> http://cxf.apache.org/ws/addressing=org.apache.cxf.ws.addressing.spring.NamespaceHandler,
>>
>> http://cxf.apache.org/simple=org.apache.cxf.frontend.spring.NamespaceHandler,
>>
>> http://www.springframework.org/schema/aop=org.springframework.aop.config.AopNamespaceHandler,
>>
>> http://www.springframework.org/schema/context=org.springframework.context.config.ContextNamespaceHandler,
>> http://cxf.apache.org/core=org.apache.cxf.bus.spring.NamespaceHandler,
>> http://cxf.apache.org/jaxrs=org.apache.cxf.jaxrs.spring.NamespaceHandler,
>>
>> http://www.springframework.org/schema/security=org.springframework.security.config.SecurityNamespaceHandler,
>>
>> http://schemas.xmlsoap.org/ws/2004/09/policy=org.apache.cxf.ws.policy.spring.PolicyNamespaceHandler,
>>
>> http://www.w3.org/ns/ws-policy=org.apache.cxf.ws.policy.spring.PolicyNamespaceHandler,
>>
>> http://cxf.apache.org/bindings/soap=org.apache.cxf.binding.soap.spring.NamespaceHandler
>> }
>> DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name'
>> specified - using generated bean name
>> [org.fcrepo.server.config.Parameter#245a690]
>> DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name'
>> specified - using generated bean name
>> [org.fcrepo.server.config.Parameter#2aba391a]
>> DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name'
>> specified - using generated bean name
>> [org.fcrepo.server.config.Parameter#27faefe0]
>> DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name'
>> specified - using generated bean name
>> [org.fcrepo.server.config.Parameter#4b9a6fa1]
>> DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name'
>> specified - using generated bean name
>> [org.fcrepo.server.config.Parameter#816d9ce]
>> DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name'
>> specified - using generated bean name
>> [org.fcrepo.server.config.Parameter#14356788]
>> DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name'
>> specified - using generated bean name
>> [org.fcrepo.server.config.Parameter#3e201c15]
>> DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name'
>> specified - using generated bean name
>> [org.fcrepo.server.config.Parameter#2e13c690]
>> DEBUG (BeanDefinitionParserDelegate) Using generated bean name
>> [util:list#14512f92] for nested custom element 'util:list'
>> DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name'
>> specified - using generated bean name
>> [org.fcrepo.server.security.impl.SimplePolicyLoader#4a5844db]
>> INFO (XmlBeanDefinitionReader) Loading XML bean definitions from file
>> [/opt/fedora/fedora-3.6/server/config/spring/doobjectvalidator.xml]
>> DEBUG (DefaultDocumentLoader) Using JAXP provider
>> [org.apache.xerces.jaxp.DocumentBuilderFactoryImpl]
>> DEBUG (PluggableSchemaResolver) Found XML schema [
>> http://www.springframework.org/schema/beans/spring-beans-3.0.xsd] in
>> classpath: org/springframework/beans/factory/xml/spring-beans-3.0.xsd
>> DEBUG (DefaultBeanDefinitionDocumentReader) Loading bean definitions
>> DEBUG (BeanDefinitionParserDelegate) No XML 'id' specified - using
>> 'org.fcrepo.server.validation.DOObjectValidator' as bean name and [] as
>> aliases
>> INFO (XmlBeanDefinitionReader) Loading XML bean definitions from file
>> [/opt/fedora/fedora-3.6/server/config/spring/triple-generator.xml]
>> DEBUG (DefaultDocumentLoader) Using JAXP provider
>> [org.apache.xerces.jaxp.DocumentBuilderFactoryImpl]
>> DEBUG (PluggableSchemaResolver) Found XML schema [
>> http://www.springframework.org/schema/beans/spring-beans-3.0.xsd] in
>> classpath: org/springframework/beans/factory/xml/spring-beans-3.0.xsd
>> DEBUG (DefaultBeanDefinitionDocumentReader) Loading bean definitions
>> INFO (GenericApplicationContext) Refreshing
>> org.springframework.context.support.GenericApplicationContext@3e0d6c32:
>> startup date [Thu Jul 18 11:20:35 EST 2013]; parent:
>> org.springframework.context.support.GenericApplicationContext@42e50215
>> DEBUG (GenericApplicationContext) Bean factory for
>> org.springframework.context.support.GenericApplicationContext@3e0d6c32:
>> org.springframework.beans.factory.support.DefaultListableBeanFactory@50e68513:
>> defining beans
>> [org.springframework.context.annotation.CommonAnnotationBeanPostProcessor,org.fcrepo.server.security.ContextRegistry,org.fcrepo.server.security.Authorization,org.fcrepo.server.security.AuthorizationConfiguration,policyFinderModules,org.fcrepo.server.security.ContextAttributeFinderModule,org.fcrepo.server.security.ResourceAttributeFinderModule,attributeFinderModules,resourceFinderModules,PDPConfigurationFactory,LegacyPDPConfig,org.fcrepo.server.security.PolicyEnforcementPoint,org.fcrepo.server.validation.DOObjectValidator,org.trippi.io.TripleIteratorFactory,Object-3.0,ContentModel-3.0,ServiceDefinition-3.0,ServiceDeployment-3.0,org.fcrepo.server.resourceIndex.TripleGenerator,org.fcrepo.server.resourceIndex.ModelBasedTripleGenerator,localMySQLPool,localDerbyPool,localOraclePool,localPostgreSQLPool,localMulgaraTriplestore,localPostgresMPTTriplestore,apimUpdateMessages,apimAccessMessages,org.fcrepo.server.storage.lowlevel.ILowlevelStorage,org.fcrepo.server.storage.lowlevel.ILowlevelStorageConfiguration,org.fcrepo.server.security.BackendSecurity,org.fcrepo.server.security.BackendSecurityConfiguration,org.fcrepo.server.storage.DOManager,org.fcrepo.server.storage.DOManagerConfiguration,org.fcrepo.server.management.Management,org.fcrepo.server.management.ManagementConfiguration,org.fcrepo.server.management.ManagementDelegate,org.fcrepo.server.management.ManagementDelegateConfiguration,org.fcrepo.server.access.Access,org.fcrepo.server.access.AccessConfiguration,org.fcrepo.server.access.DynamicAccess,org.fcrepo.server.access.DynamicAccessConfiguration,org.fcrepo.server.search.FieldSearch,org.fcrepo.server.search.FieldSearchConfiguration,org.fcrepo.server.resourceIndex.ResourceIndex,org.fcrepo.server.resourceIndex.ResourceIndexConfiguration,org.fcrepo.oai.OAIProvider,org.fcrepo.oai.OAIProviderConfiguration,org.fcrepo.server.storage.translation.DOTranslator,org.fcrepo.server.storage.translation.DOTranslatorConfiguration,org.fcrepo.server.management.PIDGenerator,org.fcrepo.server.management.PIDGeneratorConfiguration,org.fcrepo.server.messaging.Messaging,org.fcrepo.server.messaging.MessagingConfiguration,org.fcrepo.server.storage.ConnectionPoolManager,org.fcrepo.server.storage.ConnectionPoolManagerConfiguration,org.fcrepo.server.validation.DOValidator,org.fcrepo.server.validation.DOValidatorConfiguration,org.fcrepo.server.storage.ExternalContentManager,org.fcrepo.server.storage.ExternalContentManagerConfiguration,org.trippi.TriplestoreConnector,org.fcrepo.server.resourceIndex.ResourceIndexRebuilder,org.fcrepo.server.utilities.rebuild.SQLRebuilder];
>> parent:
>> org.springframework.beans.factory.support.DefaultListableBeanFactory@7795c14c
>> DEBUG (DefaultListableBeanFactory) Creating shared instance of singleton
>> bean
>> 'org.springframework.context.annotation.CommonAnnotationBeanPostProcessor'
>>
>> ****************************************************
>>
>> And here below is the output when running fedora-rebuild.sh with the
>> default logback.xml config.
>>
>> Has anyone come across this? Any suggestion to fix it?
>>
>> Thanks,
>> Javier
>>
>>
>> ************************************************************
>> javier@genesis-cl:/opt/fedora/fedora-3.6/server/bin$ ./fedora-rebuild.sh
>>
>> Fedora Rebuild Utility
>> ..........................
>>
>> WARNING: Live rebuilds are not currently supported.
>> Make sure your server is stopped before continuing.
>>
>> Server directory is /opt/fedora/fedora-3.6/server
>>
>> ---------------------------------------------------------------------
>>
>> ERROR (Server) Fatal error while starting server
>> org.springframework.beans.factory.BeanIsAbstractException: Error creating
>> bean with name 'org.fcrepo.server.security.Authorization': Bean definition
>> is abstract
>> at
>> org.springframework.beans.factory.support.AbstractBeanFactory.checkMergedBeanDefinition(AbstractBeanFactory.java:1208)
>> ~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE]
>> at
>> org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:277)
>> ~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE]
>> at
>> org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:196)
>> ~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE]
>> at
>> org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1079)
>> ~[spring-context-3.0.7.RELEASE.jar:3.0.7.RELEASE]
>> at org.fcrepo.server.Server.getBean(Server.java:1684)
>> ~[fcrepo-server-3.6.2.jar:na]
>> at
>> org.fcrepo.server.management.ManagementModule.postInitModule(ManagementModule.java:180)
>> ~[fcrepo-server-3.6.2.jar:na]
>> at org.fcrepo.server.Server.init(Server.java:655)
>> ~[fcrepo-server-3.6.2.jar:na]
>> at
>> org.fcrepo.server.utilities.rebuild.RebuildServer.getRebuildInstance(RebuildServer.java:164)
>> ~[fcrepo-server-3.6.2.jar:na]
>> at
>> org.fcrepo.server.utilities.rebuild.Rebuild.getServer(Rebuild.java:206)
>> ~[fcrepo-server-3.6.2.jar:na]
>> at
>> org.fcrepo.server.utilities.rebuild.Rebuild.getRebuilder(Rebuild.java:268)
>> ~[fcrepo-server-3.6.2.jar:na]
>> at
>> org.fcrepo.server.utilities.rebuild.Rebuild.main(Rebuild.java:450)
>> ~[fcrepo-server-3.6.2.jar:na]
>> Error: Fatal error while starting server
>>
>> java.lang.RuntimeException: Fatal error while starting server
>> at org.fcrepo.server.Server.init(Server.java:695)
>> at
>> org.fcrepo.server.utilities.rebuild.RebuildServer.getRebuildInstance(RebuildServer.java:164)
>> at
>> org.fcrepo.server.utilities.rebuild.Rebuild.getServer(Rebuild.java:206)
>> at
>> org.fcrepo.server.utilities.rebuild.Rebuild.getRebuilder(Rebuild.java:268)
>> at
>> org.fcrepo.server.utilities.rebuild.Rebuild.main(Rebuild.java:450)
>> Caused by: org.springframework.beans.factory.BeanIsAbstractException:
>> Error creating bean with name 'org.fcrepo.server.security.Authorization':
>> Bean definition is abstract
>> at
>> org.springframework.beans.factory.support.AbstractBeanFactory.checkMergedBeanDefinition(AbstractBeanFactory.java:1208)
>> at
>> org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:277)
>> at
>> org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:196)
>> at
>> org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1079)
>> at org.fcrepo.server.Server.getBean(Server.java:1684)
>> at
>> org.fcrepo.server.management.ManagementModule.postInitModule(ManagementModule.java:180)
>> at org.fcrepo.server.Server.init(Server.java:655)
>> ... 4 more
>> ERROR (Server) Fatal error while starting server
>> org.springframework.beans.factory.BeanIsAbstractException: Error creating
>> bean with name 'org.fcrepo.server.security.Authorization': Bean definition
>> is abstract
>> at
>> org.springframework.beans.factory.support.AbstractBeanFactory.checkMergedBeanDefinition(AbstractBeanFactory.java:1208)
>> ~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE]
>> at
>> org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:277)
>> ~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE]
>> at
>> org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:196)
>> ~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE]
>> at
>> org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1079)
>> ~[spring-context-3.0.7.RELEASE.jar:3.0.7.RELEASE]
>> at org.fcrepo.server.Server.getBean(Server.java:1684)
>> ~[fcrepo-server-3.6.2.jar:na]
>> at
>> org.fcrepo.server.management.ManagementModule.postInitModule(ManagementModule.java:180)
>> ~[fcrepo-server-3.6.2.jar:na]
>> at org.fcrepo.server.Server.init(Server.java:655)
>> ~[fcrepo-server-3.6.2.jar:na]
>> at
>> org.fcrepo.server.utilities.rebuild.RebuildServer.getRebuildInstance(RebuildServer.java:164)
>> ~[fcrepo-server-3.6.2.jar:na]
>> at
>> org.fcrepo.server.utilities.rebuild.Rebuild.getServer(Rebuild.java:206)
>> ~[fcrepo-server-3.6.2.jar:na]
>> at
>> org.fcrepo.server.utilities.rebuild.Rebuild.main(Rebuild.java:463)
>> ~[fcrepo-server-3.6.2.jar:na]
>> Server shutdown error: java.lang.RuntimeException: Fatal error while
>> starting server
>>
>>
>>
>> ********************************************************************************
>>
>>
>> ------------------------------------------------------------------------------
>> See everything from the browser to the database with AppDynamics
>> Get end-to-end visibility with application monitoring from AppDynamics
>> Isolate bottlenecks and diagnose root cause in seconds.
>> Start your free trial of AppDynamics Pro today!
>>
>> http://pubads.g.doubleclick.net/gampad/clk?id=48808831&iu=/4140/ostg.clktrk
>> _______________________________________________
>> Fedora-commons-users mailing list
>> [email protected]
>> https://lists.sourceforge.net/lists/listinfo/fedora-commons-users
>>
>>
>
------------------------------------------------------------------------------
See everything from the browser to the database with AppDynamics
Get end-to-end visibility with application monitoring from AppDynamics
Isolate bottlenecks and diagnose root cause in seconds.
Start your free trial of AppDynamics Pro today!
http://pubads.g.doubleclick.net/gampad/clk?id=48808831&iu=/4140/ostg.clktrk
_______________________________________________
Fedora-commons-users mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/fedora-commons-users
