On Sat, Dec 6, 2014 at 2:50 PM, Johannes Ring <[email protected]> wrote:
> On Sat, Dec 6, 2014 at 9:29 PM, Lizao Li <[email protected]> wrote: > > @Johannes. Indeed, on Arch `python` is linked to py3 and `python2` is > linked > > to py2. Is there a way to make it work by changing the default python > binary > > path? > > You can make a symbolic link to python2 in some directory > > ln -s /usr/bin/python2 python > > and then add this directory first in PATH. > > Thanks. The first hurdle is passed. After > ln -s /usr/bin/python2 python > export PATH=$PWD:$PATH > wget -O - http://fenicsproject.org/fenics-install.sh | bash > the installation failed at "boost": Output of `tail -f /home/larry/.hashdist/tmp/boost-tyvhwearpzdg/build.log` > 2014/12/06 15:18:08 - INFO: [package:run_job] > 2014/12/06 15:18:08 - INFO: [package:run_job] compilation terminated. > 2014/12/06 15:18:08 - INFO: [package:run_job] > 2014/12/06 15:18:08 - INFO: [package:run_job] "g++" > -ftemplate-depth-128 -O3 -finline-functions -Wno-inline -Wall -pthread > -fPIC -m64 -DBOOST_ALL_NO_LIB=1 -DBOOST_PYTHON_SOURCE -DNDEBUG -I"." > -I"/usr/include/python3.4" -c -o > "_build/boost/bin.v2/libs/python/build/gcc-4.9.2/release/address-model-64/threading-multi/numeric.o" > "libs/python/src/numeric.cpp" > 2014/12/06 15:18:08 - INFO: [package:run_job] > 2014/12/06 15:18:08 - INFO: [package:run_job] ...failed gcc.compile.c++ > _build/boost/bin.v2/libs/python/build/gcc-4.9.2/release/address-model-64/threading-multi/numeric.o... > 2014/12/06 15:18:08 - INFO: [package:run_job] ...failed updating 1 > target... > 2014/12/06 15:18:08 - INFO: [package:run_job] ...updated 10689 targets... > 2014/12/06 15:18:08 - ERROR: [package:run_job] Command '[u'/bin/bash', > '_hashdist/build.sh']' returned non-zero exit status 1 > 2014/12/06 15:18:08 - ERROR: [package:run_job] command failed (code=1); > raising > It seems the python path is still wrong. Is there a way to set the python_lib and pythong_include path? > Johannes > > > I also tried it on a production cluster with CentOS 6.5. It failed at > > package "eigen" > >> > >> [eigen] Building eigen/hfjxjswpo5ct, follow log with: > >> [eigen] tail -f > >> > /panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/eigen-hfjxjswpo5ct/build.log > > Take a look at this file. > Thanks for pointing that out. I thought when it said "[eigen] tail -f ...." it meant "what follows is the output from tail -f ..." already. Apparently it is not. The full log revealed that cmake is missing. Is there an easy to add that? (I do not have sudo on that cluster)) > > Johannes > -- Lizao (Larry) Li Univeristy of Minnesota
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