On Mon, Dec 8, 2014 at 11:00 AM, Johannes Ring <[email protected]> wrote:
> On Mon, Dec 8, 2014 at 5:05 PM, Lizao Li <[email protected]> wrote:
> > @Johannes. It almost get through on the CentOS cluster now. Dolfin fails
> to
> > build at
> >>
> >> tail -f
> >>
> /panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-hkxoe2xhroe3-1/build.log
> >> 2014/12/08 09:30:21 - INFO: [package:run_job]
> >>
> /panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-hkxoe2xhroe3-1/dolfin/parameter/Parameters.h:159:
> >> note: void dolfin::Parameters::add(std::string, const
> char*)
> >> 2014/12/08 09:30:21 - INFO: [package:run_job]
> >>
> /panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-hkxoe2xhroe3-1/dolfin/parameter/Parameters.h:162:
> >> note: void dolfin::Parameters::add(std::string,
> std::string,
> >> std::set<std::basic_string<char, std::char_traits<char>,
> >> std::allocator<char> >, std::less<std::basic_string<char,
> >> std::char_traits<char>, std::allocator<char> > >,
> >> std::allocator<std::basic_string<char, std::char_traits<char>,
> >> std::allocator<char> > > >)
> >> 2014/12/08 09:30:21 - INFO: [package:run_job]
> >>
> /panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-hkxoe2xhroe3-1/dolfin/parameter/Parameters.h:165:
> >> note: void dolfin::Parameters::add(std::string, const
> char*,
> >> std::set<std::basic_string<char, std::char_traits<char>,
> >> std::allocator<char> >, std::less<std::basic_string<char,
> >> std::char_traits<char>, std::allocator<char> > >,
> >> std::allocator<std::basic_string<char, std::char_traits<char>,
> >> std::allocator<char> > > >)
> >> 2014/12/08 09:30:21 - INFO: [package:run_job]
> >>
> /panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-hkxoe2xhroe3-1/dolfin/parameter/Parameters.h:168:
> >> note: void dolfin::Parameters::add(std::string, bool)
> >> 2014/12/08 09:30:21 - INFO: [package:run_job]
> >>
> /panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-hkxoe2xhroe3-1/dolfin/parameter/Parameters.h:171:
> >> note: void dolfin::Parameters::add(const
> >> dolfin::Parameters&)
> >> 2014/12/08 09:30:22 - INFO: [package:run_job] gmake[2]: ***
> >> [dolfin/CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o] Error 1
> >> 2014/12/08 09:30:22 - INFO: [package:run_job] gmake[1]: ***
> >> [dolfin/CMakeFiles/dolfin.dir/all] Error 2
> >> 2014/12/08 09:30:22 - INFO: [package:run_job] gmake: *** [all] Error 2
> >> 2014/12/08 09:30:22 - ERROR: [package:run_job] Command '[u'/bin/bash',
> >> '_hashdist/build.sh']' returned non-zero exit status 2
> >> 2014/12/08 09:30:22 - ERROR: [package:run_job] command failed (code=2);
> >> raising
>
> I'm not sure if the actual error is shown here. Can you include more
> of build.log?
>
>
I digged further. I think the meaningful error message is somewhere in the
middle of build.log:
2014/12/08 11:30:25 - INFO: [package:run_job]
xxx/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/GlobalParameters.h:84:
error: no matching function for call to 'dolfin::Parameters::add(const char
[21], std::string&, <brace-enclosed initializer list>)'
I also attached the full build.log at the end. Does Hashdist has its own
gcc or use the system gcc? On CentOS, a somewhat old gcc is used
gcc --version
gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-4)
Might this be the problem?
>
> > On Arch, it still fails at boost, where the wrong python include is
> used. I
> > guess python paths are probably not set by the python package by default.
> >>
> >> tail -f /home/larry/.hashdist/tmp/boost-43vhthk4e2bi/build.log
> >> [boost|ERROR] Command '[u'/bin/bash', '_hashdist/build.sh']' returned
> >> non-zero exit status 1
> >> [boost|ERROR] command failed (code=1); raising
> >> [larry@quetzalcoatlus temp]$ tail -f
> >> /home/larry/.hashdist/tmp/boost-43vhthk4e2bi/build.log
> >> 2014/12/08 09:44:04 - INFO: [package:run_job] ^
> >> 2014/12/08 09:44:04 - INFO: [package:run_job] compilation terminated.
> >> 2014/12/08 09:44:04 - INFO: [package:run_job]
> >> 2014/12/08 09:44:04 - INFO: [package:run_job] "g++"
> >> -ftemplate-depth-128 -O3 -finline-functions -Wno-inline -Wall -pthread
> -fPIC
> >> -m64 -DBOOST_ALL_NO_LIB=1 -DBOOST_PYTHON_SOURCE -DNDEBUG -I"."
> >> -I"/usr/include/python3.4" -c -o
> >>
> "_build/boost/bin.v2/libs/python/build/gcc-4.9.2/release/address-model-64/threading-multi/numeric.o"
> >> "libs/python/src/numeric.cpp"
> >> 2014/12/08 09:44:04 - INFO: [package:run_job]
> >> 2014/12/08 09:44:04 - INFO: [package:run_job] ...failed gcc.compile.c++
> >>
> _build/boost/bin.v2/libs/python/build/gcc-4.9.2/release/address-model-64/threading-multi/numeric.o...
> >> 2014/12/08 09:44:04 - INFO: [package:run_job] ...failed updating 1
> >> target...
> >> 2014/12/08 09:44:04 - INFO: [package:run_job] ...updated 10689
> targets...
> >> 2014/12/08 09:44:04 - ERROR: [package:run_job] Command '[u'/bin/bash',
> >> '_hashdist/build.sh']' returned non-zero exit status 1
> >> 2014/12/08 09:44:04 - ERROR: [package:run_job] command failed (code=1);
> >> raising
>
> I think I know what the problem is and I have made a fix. Please try
> again with the latest script.
>
> Thanks, that worked~ Boost is successfully compiled. But the installation
failed at slepc:
tail -f /home/larry/.hashdist/tmp/slepc-qzbng3rjmb5i/build.log
2014/12/08 12:30:28 - INFO: [package:run_job] u'PATCHELF_DIR':
u'/home/larry/.hashdist/bld/patchelf/k3rloj265ogt',
2014/12/08 12:30:28 - INFO: [package:run_job] u'PATCHELF_ID':
u'patchelf/k3rloj265ogtl4dmmmbmyt34dnffryka',
2014/12/08 12:30:28 - INFO: [package:run_job] 'PATH': u'/usr/bin:/bin',
2014/12/08 12:30:28 - INFO: [package:run_job] u'PETSC_DIR':
u'/home/larry/.hashdist/bld/petsc/zr5ml62hgwp6',
2014/12/08 12:30:28 - INFO: [package:run_job] u'PETSC_ID':
u'petsc/zr5ml62hgwp6wgpoyob36cvcr5ugyzht',
2014/12/08 12:30:28 - INFO: [package:run_job] 'PWD':
u'/home/larry/.hashdist/tmp/slepc-qzbng3rjmb5i'}
2014/12/08 12:30:28 - INFO: [package:run_job] Configure does not support
Python 3 yet, please run as
2014/12/08 12:30:28 - INFO: [package:run_job] python2 './configure'
'--prefix=/home/larry/.hashdist/bld/slepc/qzbng3rjmb5i'
2014/12/08 12:30:28 - ERROR: [package:run_job] Command '[u'/bin/bash',
'_hashdist/build.sh']' returned non-zero exit status 1
2014/12/08 12:30:28 - ERROR: [package:run_job] command failed (code=1);
raising
It seems slepc had its own PATH setting which did not use my local
python2 link.
> > I looked further into Hashdist. Is my understanding correct that this
> > approach is basically a more sophisticaed implementation of dorsal
> writing
> > in python 2?
>
> Well, I guess you can say that.
> Johannes
>
--
Lizao (Larry) Li
Univeristy of Minnesota
2014/12/08 11:26:10 - INFO: [package:source_cache] running: ['git', 'rev-list',
'-n1', '--quiet', u'04e0f27510d409e0e3d3ac6e9feef7ba50279529']
2014/12/08 11:26:10 - INFO: [package:source_cache] running: ['git', 'rev-list',
'-n1', '--quiet', u'04e0f27510d409e0e3d3ac6e9feef7ba50279529']
2014/12/08 11:26:10 - INFO: [package:source_cache] running: ['git', 'rev-list',
'-n1', '--quiet', u'04e0f27510d409e0e3d3ac6e9feef7ba50279529']
2014/12/08 11:26:10 - INFO: [package:source_cache] running: ['git', 'rev-list',
'-n1', '--quiet', u'04e0f27510d409e0e3d3ac6e9feef7ba50279529']
2014/12/08 11:26:10 - INFO: [package:source_cache] running: ['git', 'rev-list',
'-n1', '--quiet', u'04e0f27510d409e0e3d3ac6e9feef7ba50279529']
2014/12/08 11:26:10 - INFO: [package:source_cache] running: ['git', 'rev-list',
'-n1', '--quiet', u'04e0f27510d409e0e3d3ac6e9feef7ba50279529']
2014/12/08 11:26:10 - INFO: [package:source_cache] running: ['git', 'branch',
u'tempmark/04e0f27510d409e0e3d3ac6e9feef7ba50279529',
u'04e0f27510d409e0e3d3ac6e9feef7ba50279529']
2014/12/08 11:26:10 - INFO: [package:source_cache] running: ['git', 'init']
2014/12/08 11:26:10 - INFO: [package:source_cache] running: ['git', 'fetch',
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/src/git/dolfin',
u'tempmark/04e0f27510d409e0e3d3ac6e9feef7ba50279529']
2014/12/08 11:26:17 - INFO: [package:source_cache] running: ['git', 'checkout',
u'04e0f27510d409e0e3d3ac6e9feef7ba50279529']
2014/12/08 11:26:30 - INFO: [package:source_cache] running: ['git', 'branch',
'-D', u'tempmark/04e0f27510d409e0e3d3ac6e9feef7ba50279529']
2014/12/08 11:26:30 - INFO: [package:run_job] running [u'/bin/bash',
'_hashdist/build.sh']
2014/12/08 11:26:30 - INFO: [package:run_job] environment:
2014/12/08 11:26:30 - INFO: [package:run_job] {'ARTIFACT':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/dolfin/4kidvbj2v52z',
2014/12/08 11:26:30 - INFO: [package:run_job] 'BASH': u'/bin/bash',
2014/12/08 11:26:30 - INFO: [package:run_job] u'BLAS_DIR':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/blas/xsvwemqbi4dt',
2014/12/08 11:26:30 - INFO: [package:run_job] u'BLAS_ID':
u'blas/xsvwemqbi4dtutp326zzjpoldt62lqpa',
2014/12/08 11:26:30 - INFO: [package:run_job] u'BOOST_DIR':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/boost/zmax7yphkmao',
2014/12/08 11:26:30 - INFO: [package:run_job] u'BOOST_ID':
u'boost/zmax7yphkmao7evnbjufr42nd4a3frmj',
2014/12/08 11:26:30 - INFO: [package:run_job] 'BOOST_MULTITHREADED': u'OFF',
2014/12/08 11:26:30 - INFO: [package:run_job] 'BUILD':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z',
2014/12/08 11:26:30 - INFO: [package:run_job] u'BZIP2_DIR':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/bzip2/yhn7t7sdxdfd',
2014/12/08 11:26:30 - INFO: [package:run_job] u'BZIP2_ID':
u'bzip2/yhn7t7sdxdfdkhyie6hg36hqvgccj7rj',
2014/12/08 11:26:30 - INFO: [package:run_job] 'CMAKE':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/cmake/ugrko5ribtzl/bin/cmake',
2014/12/08 11:26:30 - INFO: [package:run_job] u'CMAKE_DIR':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/cmake/ugrko5ribtzl',
2014/12/08 11:26:30 - INFO: [package:run_job] u'CMAKE_ID':
u'cmake/ugrko5ribtzlnijeygdngjxzk774ea6w',
2014/12/08 11:26:30 - INFO: [package:run_job] u'EIGEN_DIR':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/eigen/hnx37jhbthr7',
2014/12/08 11:26:30 - INFO: [package:run_job] u'EIGEN_ID':
u'eigen/hnx37jhbthr76kcfxbecmb37lvsw3tio',
2014/12/08 11:26:30 - INFO: [package:run_job] u'FFC_DIR':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/ffc/ev6b6ehxaopz',
2014/12/08 11:26:30 - INFO: [package:run_job] u'FFC_ID':
u'ffc/ev6b6ehxaopz477kqelkegyv3okpuddj',
2014/12/08 11:26:30 - INFO: [package:run_job] u'FIAT_DIR':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/fiat/66hyry37t772',
2014/12/08 11:26:30 - INFO: [package:run_job] u'FIAT_ID':
u'fiat/66hyry37t772o47et5diapa3tqol3u2r',
2014/12/08 11:26:30 - INFO: [package:run_job] 'HASHDIST_CPU_COUNT': '1',
2014/12/08 11:26:30 - INFO: [package:run_job] u'HDF5_DIR':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/hdf5/526csz6keqgw',
2014/12/08 11:26:30 - INFO: [package:run_job] u'HDF5_ID':
u'hdf5/526csz6keqgwfu5xmjeqheawdt2ghdms',
2014/12/08 11:26:30 - INFO: [package:run_job] 'HDF5_ROOT':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/hdf5/526csz6keqgw',
2014/12/08 11:26:30 - INFO: [package:run_job] 'HDIST_CONFIG':
'{"gc_roots":"/panfs/roc/groups/5/arnoldd/lil1/.hashdist/gcroots","build_stores":[{"dir":"/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld"}],"source_caches":[{"dir":"/panfs/roc/groups/5/arnoldd/lil1/.hashdist/src"}],"cache":"/panfs/roc/groups/5/arnoldd/lil1/.hashdist/cache","build_temp":"/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp"}',
2014/12/08 11:26:30 - INFO: [package:run_job] 'HDIST_IMPORT':
u'blas/xsvwemqbi4dtutp326zzjpoldt62lqpa boost/zmax7yphkmao7evnbjufr42nd4a3frmj
bzip2/yhn7t7sdxdfdkhyie6hg36hqvgccj7rj cmake/ugrko5ribtzlnijeygdngjxzk774ea6w
eigen/hnx37jhbthr76kcfxbecmb37lvsw3tio ffc/ev6b6ehxaopz477kqelkegyv3okpuddj
fiat/66hyry37t772o47et5diapa3tqol3u2r hdf5/526csz6keqgwfu5xmjeqheawdt2ghdms
instant/kigbfivjhzy2lpfbl7nglvbsdxg5t4xo
libxml2/rnluwaluut6hbddgbuhmnvlhgewcmiv4 mpi/uypp5r7iktyt2cdswp3j2hlatpowq5iv
numpy/3hrohecbsctu3yvy7vvy6oz5pxyx2gpy
parmetis/r4irzb2fugktajlvpghq7xocldlwdrk4
patchelf/k3rloj265ogtl4dmmmbmyt34dnffryka
petsc/zr5ml62hgwp6wgpoyob36cvcr5ugyzht
pkg-config/pjksilnbb4iyvrsemnzshe2d3o7uwpa5
ply/6pvgzq3qp6zqb4f2o7vph5eezbo3zkrw python/ctzx2dm36c6dhl5oyrpmtcdv7vxuoy65
scotch/2xawkbuuknogjiod5otswxc4u53hoxyw six/jads6verbqes45sfkfd33uwdyk5o6w7l
slepc/qzbng3rjmb5ik3rvfh6lpx4x54c7pdzk
suitesparse/hudaaariibpah7cr6emr3cstjnp3nuln
swig/3lpocpbczonvlk57trvndbrlfugaihyu sympy/zjk5rig5qkqsvoykcweg6zk3wasngux4
ufl/lma4j4t7ocbiaqkulpxisrra5kquljfh vtk/spx23me2n24gzglxe7ojrxow57fyu7yx
zlib/3el5ccejre7bcjqgld5gp6iym4ccd5oe',
2014/12/08 11:26:30 - INFO: [package:run_job] 'HDIST_IMPORT_PATHS':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/blas/xsvwemqbi4dt:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/boost/zmax7yphkmao:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/bzip2/yhn7t7sdxdfd:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/cmake/ugrko5ribtzl:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/eigen/hnx37jhbthr7:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/ffc/ev6b6ehxaopz:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/fiat/66hyry37t772:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/hdf5/526csz6keqgw:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/instant/kigbfivjhzy2:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/libxml2/rnluwaluut6h:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/mpi/uypp5r7iktyt:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/numpy/3hrohecbsctu:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/parmetis/r4irzb2fugkt:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/patchelf/k3rloj265ogt:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/petsc/zr5ml62hgwp6:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/pkg-config/pjksilnbb4iy:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/ply/6pvgzq3qp6zq:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/python/ctzx2dm36c6d:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/scotch/2xawkbuuknog:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/six/jads6verbqes:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/slepc/qzbng3rjmb5i:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/suitesparse/hudaaariibpa:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/swig/3lpocpbczonv:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/sympy/zjk5rig5qkqs:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/ufl/lma4j4t7ocbi:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/vtk/spx23me2n24g:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/zlib/3el5ccejre7b',
2014/12/08 11:26:30 - INFO: [package:run_job] 'HDIST_VIRTUALS': '',
2014/12/08 11:26:30 - INFO: [package:run_job] u'INSTANT_DIR':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/instant/kigbfivjhzy2',
2014/12/08 11:26:30 - INFO: [package:run_job] u'INSTANT_ID':
u'instant/kigbfivjhzy2lpfbl7nglvbsdxg5t4xo',
2014/12/08 11:26:30 - INFO: [package:run_job] u'LIBXML2_DIR':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/libxml2/rnluwaluut6h',
2014/12/08 11:26:30 - INFO: [package:run_job] u'LIBXML2_ID':
u'libxml2/rnluwaluut6hbddgbuhmnvlhgewcmiv4',
2014/12/08 11:26:30 - INFO: [package:run_job] 'MPICC':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/mpi/uypp5r7iktyt/bin/mpicc',
2014/12/08 11:26:30 - INFO: [package:run_job] 'MPICXX':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/mpi/uypp5r7iktyt/bin/mpic++',
2014/12/08 11:26:30 - INFO: [package:run_job] 'MPIEXEC':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/mpi/uypp5r7iktyt/bin/mpiexec',
2014/12/08 11:26:30 - INFO: [package:run_job] 'MPIF77':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/mpi/uypp5r7iktyt/bin/mpif77',
2014/12/08 11:26:30 - INFO: [package:run_job] 'MPIF90':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/mpi/uypp5r7iktyt/bin/mpif90',
2014/12/08 11:26:30 - INFO: [package:run_job] u'MPI_DIR':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/mpi/uypp5r7iktyt',
2014/12/08 11:26:30 - INFO: [package:run_job] u'MPI_ID':
u'mpi/uypp5r7iktyt2cdswp3j2hlatpowq5iv',
2014/12/08 11:26:30 - INFO: [package:run_job] u'NUMPY_DIR':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/numpy/3hrohecbsctu',
2014/12/08 11:26:30 - INFO: [package:run_job] u'NUMPY_ID':
u'numpy/3hrohecbsctu3yvy7vvy6oz5pxyx2gpy',
2014/12/08 11:26:30 - INFO: [package:run_job] u'PARMETIS_DIR':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/parmetis/r4irzb2fugkt',
2014/12/08 11:26:30 - INFO: [package:run_job] u'PARMETIS_ID':
u'parmetis/r4irzb2fugktajlvpghq7xocldlwdrk4',
2014/12/08 11:26:30 - INFO: [package:run_job] 'PATCHELF':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/patchelf/k3rloj265ogt/bin/patchelf',
2014/12/08 11:26:30 - INFO: [package:run_job] u'PATCHELF_DIR':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/patchelf/k3rloj265ogt',
2014/12/08 11:26:30 - INFO: [package:run_job] u'PATCHELF_ID':
u'patchelf/k3rloj265ogtl4dmmmbmyt34dnffryka',
2014/12/08 11:26:30 - INFO: [package:run_job] 'PATH':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/swig/3lpocpbczonv/bin:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/python/ctzx2dm36c6d/bin:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/pkg-config/pjksilnbb4iy/bin:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/mpi/uypp5r7iktyt/bin:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/libxml2/rnluwaluut6h/bin:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/hdf5/526csz6keqgw/bin:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/ffc/ev6b6ehxaopz/bin:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/cmake/ugrko5ribtzl/bin:/usr/bin:/bin',
2014/12/08 11:26:30 - INFO: [package:run_job] u'PETSC_DIR':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/petsc/zr5ml62hgwp6',
2014/12/08 11:26:30 - INFO: [package:run_job] u'PETSC_ID':
u'petsc/zr5ml62hgwp6wgpoyob36cvcr5ugyzht',
2014/12/08 11:26:30 - INFO: [package:run_job] u'PKG_CONFIG_DIR':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/pkg-config/pjksilnbb4iy',
2014/12/08 11:26:30 - INFO: [package:run_job] 'PKG_CONFIG_EXECUTABLE':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/pkg-config/pjksilnbb4iy/bin/pkg-config',
2014/12/08 11:26:30 - INFO: [package:run_job] u'PKG_CONFIG_ID':
u'pkg-config/pjksilnbb4iyvrsemnzshe2d3o7uwpa5',
2014/12/08 11:26:30 - INFO: [package:run_job] 'PKG_CONFIG_PATH':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/python/ctzx2dm36c6d/lib/pkgconfig:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/libxml2/rnluwaluut6h/lib/pkgconfig',
2014/12/08 11:26:30 - INFO: [package:run_job] u'PLY_DIR':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/ply/6pvgzq3qp6zq',
2014/12/08 11:26:30 - INFO: [package:run_job] u'PLY_ID':
u'ply/6pvgzq3qp6zqb4f2o7vph5eezbo3zkrw',
2014/12/08 11:26:30 - INFO: [package:run_job] 'PWD':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z',
2014/12/08 11:26:30 - INFO: [package:run_job] 'PYTHON':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/python/ctzx2dm36c6d/bin/python',
2014/12/08 11:26:30 - INFO: [package:run_job] 'PYTHONPATH':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/vtk/spx23me2n24g/lib/python2.7/site-packages:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/ufl/lma4j4t7ocbi/lib/python2.7/site-packages:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/sympy/zjk5rig5qkqs/lib/python2.7/site-packages:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/six/jads6verbqes/lib/python2.7/site-packages:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/ply/6pvgzq3qp6zq/lib/python2.7/site-packages:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/numpy/3hrohecbsctu/lib/python2.7/site-packages:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/instant/kigbfivjhzy2/lib/python2.7/site-packages:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/fiat/66hyry37t772/lib/python2.7/site-packages:/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/ffc/ev6b6ehxaopz/lib/python2.7/site-packages',
2014/12/08 11:26:30 - INFO: [package:run_job] u'PYTHON_DIR':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/python/ctzx2dm36c6d',
2014/12/08 11:26:30 - INFO: [package:run_job] u'PYTHON_ID':
u'python/ctzx2dm36c6dhl5oyrpmtcdv7vxuoy65',
2014/12/08 11:26:30 - INFO: [package:run_job] u'SCOTCH_DIR':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/scotch/2xawkbuuknog',
2014/12/08 11:26:30 - INFO: [package:run_job] u'SCOTCH_ID':
u'scotch/2xawkbuuknogjiod5otswxc4u53hoxyw',
2014/12/08 11:26:30 - INFO: [package:run_job] u'SIX_DIR':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/six/jads6verbqes',
2014/12/08 11:26:30 - INFO: [package:run_job] u'SIX_ID':
u'six/jads6verbqes45sfkfd33uwdyk5o6w7l',
2014/12/08 11:26:30 - INFO: [package:run_job] u'SLEPC_DIR':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/slepc/qzbng3rjmb5i',
2014/12/08 11:26:30 - INFO: [package:run_job] u'SLEPC_ID':
u'slepc/qzbng3rjmb5ik3rvfh6lpx4x54c7pdzk',
2014/12/08 11:26:30 - INFO: [package:run_job] u'SUITESPARSE_DIR':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/suitesparse/hudaaariibpa',
2014/12/08 11:26:30 - INFO: [package:run_job] u'SUITESPARSE_ID':
u'suitesparse/hudaaariibpah7cr6emr3cstjnp3nuln',
2014/12/08 11:26:30 - INFO: [package:run_job] u'SWIG_DIR':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/swig/3lpocpbczonv',
2014/12/08 11:26:30 - INFO: [package:run_job] 'SWIG_EXECUTABLE':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/swig/3lpocpbczonv/bin/swig',
2014/12/08 11:26:30 - INFO: [package:run_job] u'SWIG_ID':
u'swig/3lpocpbczonvlk57trvndbrlfugaihyu',
2014/12/08 11:26:30 - INFO: [package:run_job] 'SWIG_LIB':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/swig/3lpocpbczonv/share/swig/3.0.2',
2014/12/08 11:26:30 - INFO: [package:run_job] u'SYMPY_DIR':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/sympy/zjk5rig5qkqs',
2014/12/08 11:26:30 - INFO: [package:run_job] u'SYMPY_ID':
u'sympy/zjk5rig5qkqsvoykcweg6zk3wasngux4',
2014/12/08 11:26:30 - INFO: [package:run_job] u'UFL_DIR':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/ufl/lma4j4t7ocbi',
2014/12/08 11:26:30 - INFO: [package:run_job] u'UFL_ID':
u'ufl/lma4j4t7ocbiaqkulpxisrra5kquljfh',
2014/12/08 11:26:30 - INFO: [package:run_job] u'VTK_DIR':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/vtk/spx23me2n24g',
2014/12/08 11:26:30 - INFO: [package:run_job] u'VTK_ID':
u'vtk/spx23me2n24gzglxe7ojrxow57fyu7yx',
2014/12/08 11:26:30 - INFO: [package:run_job] u'ZLIB_DIR':
u'/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/zlib/3el5ccejre7b',
2014/12/08 11:26:30 - INFO: [package:run_job] u'ZLIB_ID':
u'zlib/3el5ccejre7bcjqgld5gp6iym4ccd5oe'}
2014/12/08 11:26:30 - INFO: [package:run_job] -- The C compiler identification
is GNU 4.4.7
2014/12/08 11:26:30 - INFO: [package:run_job] -- The CXX compiler
identification is GNU 4.4.7
2014/12/08 11:26:30 - INFO: [package:run_job] -- Check for working C compiler:
/usr/bin/cc
2014/12/08 11:26:30 - INFO: [package:run_job] -- Check for working C compiler:
/usr/bin/cc -- works
2014/12/08 11:26:30 - INFO: [package:run_job] -- Detecting C compiler ABI info
2014/12/08 11:26:31 - INFO: [package:run_job] -- Detecting C compiler ABI info
- done
2014/12/08 11:26:31 - INFO: [package:run_job] -- Check for working CXX
compiler: /usr/bin/c++
2014/12/08 11:26:31 - INFO: [package:run_job] -- Check for working CXX
compiler: /usr/bin/c++ -- works
2014/12/08 11:26:31 - INFO: [package:run_job] -- Detecting CXX compiler ABI info
2014/12/08 11:26:31 - INFO: [package:run_job] -- Detecting CXX compiler ABI
info - done
2014/12/08 11:26:32 - INFO: [package:run_job] -- Performing Test HAVE_PIPE
2014/12/08 11:26:32 - INFO: [package:run_job] -- Performing Test HAVE_PIPE -
Success
2014/12/08 11:26:32 - INFO: [package:run_job] -- Performing Test HAVE_PEDANTIC
2014/12/08 11:26:32 - INFO: [package:run_job] -- Performing Test HAVE_PEDANTIC
- Success
2014/12/08 11:26:32 - INFO: [package:run_job] -- Performing Test HAVE_STD_CPP11
2014/12/08 11:26:33 - INFO: [package:run_job] -- Performing Test HAVE_STD_CPP11
- Failed
2014/12/08 11:26:33 - INFO: [package:run_job] -- Performing Test HAVE_STD_CPP0x
2014/12/08 11:26:33 - INFO: [package:run_job] -- Performing Test HAVE_STD_CPP0x
- Success
2014/12/08 11:26:33 - INFO: [package:run_job] -- Performing Test HAVE_DEBUG
2014/12/08 11:26:34 - INFO: [package:run_job] -- Performing Test HAVE_DEBUG -
Success
2014/12/08 11:26:34 - INFO: [package:run_job] -- Performing Test
HAVE_O2_OPTIMISATION
2014/12/08 11:26:34 - INFO: [package:run_job] -- Performing Test
HAVE_O2_OPTIMISATION - Success
2014/12/08 11:26:36 - INFO: [package:run_job] -- The Fortran compiler
identification is GNU
2014/12/08 11:26:36 - INFO: [package:run_job] -- Check for working Fortran
compiler: /usr/bin/gfortran
2014/12/08 11:26:36 - INFO: [package:run_job] -- Check for working Fortran
compiler: /usr/bin/gfortran -- works
2014/12/08 11:26:36 - INFO: [package:run_job] -- Detecting Fortran compiler ABI
info
2014/12/08 11:26:36 - INFO: [package:run_job] -- Detecting Fortran compiler ABI
info - done
2014/12/08 11:26:36 - INFO: [package:run_job] -- Checking whether
/usr/bin/gfortran supports Fortran 90
2014/12/08 11:26:37 - INFO: [package:run_job] -- Checking whether
/usr/bin/gfortran supports Fortran 90 -- yes
2014/12/08 11:26:37 - INFO: [package:run_job] -- Looking for sys/types.h
2014/12/08 11:26:37 - INFO: [package:run_job] -- Looking for sys/types.h - found
2014/12/08 11:26:37 - INFO: [package:run_job] -- Looking for stdint.h
2014/12/08 11:26:38 - INFO: [package:run_job] -- Looking for stdint.h - found
2014/12/08 11:26:38 - INFO: [package:run_job] -- Looking for stddef.h
2014/12/08 11:26:38 - INFO: [package:run_job] -- Looking for stddef.h - found
2014/12/08 11:26:38 - INFO: [package:run_job] -- Check size of size_t
2014/12/08 11:26:38 - INFO: [package:run_job] -- Check size of size_t - done
2014/12/08 11:26:38 - INFO: [package:run_job] -- Found MPI_C:
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/mpi/uypp5r7iktyt/lib/libmpi.so;/usr/lib64/libdl.so;/usr/lib64/libm.so;/usr/lib64/libnuma.so;/usr/lib64/librt.so;/usr/lib64/libnsl.so;/usr/lib64/libutil.so;/usr/lib64/libm.so;/usr/lib64/libdl.so
2014/12/08 11:26:38 - INFO: [package:run_job] -- Found MPI_CXX:
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/mpi/uypp5r7iktyt/lib/libmpi_cxx.so;/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/mpi/uypp5r7iktyt/lib/libmpi.so;/usr/lib64/libdl.so;/usr/lib64/libm.so;/usr/lib64/libnuma.so;/usr/lib64/librt.so;/usr/lib64/libnsl.so;/usr/lib64/libutil.so;/usr/lib64/libm.so;/usr/lib64/libdl.so
2014/12/08 11:26:38 - INFO: [package:run_job] -- Found MPI_Fortran:
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/mpi/uypp5r7iktyt/lib/libmpi_f90.so;/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/mpi/uypp5r7iktyt/lib/libmpi_f77.so;/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/mpi/uypp5r7iktyt/lib/libmpi.so;/usr/lib64/libdl.so;/usr/lib64/libm.so;/usr/lib64/libnuma.so;/usr/lib64/librt.so;/usr/lib64/libnsl.so;/usr/lib64/libutil.so;/usr/lib64/libm.so;/usr/lib64/libdl.so
2014/12/08 11:26:38 - INFO: [package:run_job] -- Try OpenMP C flag = [-fopenmp]
2014/12/08 11:26:38 - INFO: [package:run_job] -- Performing Test
OpenMP_FLAG_DETECTED
2014/12/08 11:26:39 - INFO: [package:run_job] -- Performing Test
OpenMP_FLAG_DETECTED - Success
2014/12/08 11:26:39 - INFO: [package:run_job] -- Try OpenMP CXX flag =
[-fopenmp]
2014/12/08 11:26:39 - INFO: [package:run_job] -- Performing Test
OpenMP_FLAG_DETECTED
2014/12/08 11:26:39 - INFO: [package:run_job] -- Performing Test
OpenMP_FLAG_DETECTED - Success
2014/12/08 11:26:39 - INFO: [package:run_job] -- Found OpenMP: -fopenmp
2014/12/08 11:26:39 - INFO: [package:run_job] -- Performing Test
OPENMP_UINT_TEST_RUNS
2014/12/08 11:26:40 - INFO: [package:run_job] -- Performing Test
OPENMP_UINT_TEST_RUNS - Success
2014/12/08 11:26:40 - INFO: [package:run_job] -- Boost version: 1.55.0
2014/12/08 11:26:40 - INFO: [package:run_job] -- Found the following Boost
libraries:
2014/12/08 11:26:40 - INFO: [package:run_job] -- filesystem
2014/12/08 11:26:40 - INFO: [package:run_job] -- program_options
2014/12/08 11:26:40 - INFO: [package:run_job] -- system
2014/12/08 11:26:40 - INFO: [package:run_job] -- thread
2014/12/08 11:26:40 - INFO: [package:run_job] -- iostreams
2014/12/08 11:26:40 - INFO: [package:run_job] -- UFC version: 1.4.0+
2014/12/08 11:26:40 - INFO: [package:run_job]
2014/12/08 11:26:41 - INFO: [package:run_job] -- Found LibXml2:
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/libxml2/rnluwaluut6h/lib/libxml2.so
(found version "2.9.1")
2014/12/08 11:26:41 - INFO: [package:run_job] -- Found PythonInterp:
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/python/ctzx2dm36c6d/bin/python
(found suitable version "2.7.8", minimum required is "2")
2014/12/08 11:26:42 - INFO: [package:run_job] -- NumPy header version 1.8.2
found
2014/12/08 11:26:42 - INFO: [package:run_job] -- Found SWIG:
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/swig/3lpocpbczonv/bin/swig
(found version "3.0.2")
2014/12/08 11:26:42 - INFO: [package:run_job] -- Checking for package 'PETSc'
2014/12/08 11:26:42 - INFO: [package:run_job] -- PETSC_DIR is
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/petsc/zr5ml62hgwp6
2014/12/08 11:26:42 - INFO: [package:run_job] -- PETSC_ARCH is empty
2014/12/08 11:26:42 - INFO: [package:run_job] -- Found petscconf.h
2014/12/08 11:26:43 - INFO: [package:run_job] -- Performing test
PETSC_TEST_RUNS - Success
2014/12/08 11:26:43 - INFO: [package:run_job] -- Performing Test
PETSC_CUSP_FOUND
2014/12/08 11:26:44 - INFO: [package:run_job] -- Performing Test
PETSC_CUSP_FOUND - Failed
2014/12/08 11:26:44 - INFO: [package:run_job] -- PETSc configured without Cusp
support
2014/12/08 11:26:44 - INFO: [package:run_job] -- Check size of PetscInt
2014/12/08 11:26:44 - INFO: [package:run_job] -- Check size of PetscInt - done
2014/12/08 11:26:44 - INFO: [package:run_job] -- Found PETSc:
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/petsc/zr5ml62hgwp6/lib/libpetsc.so
(Required is at least version "3.3")
2014/12/08 11:26:44 - INFO: [package:run_job] -- Checking for package 'SLEPc'
2014/12/08 11:26:44 - INFO: [package:run_job] -- SLEPC_DIR is
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/slepc/qzbng3rjmb5i
2014/12/08 11:26:45 - INFO: [package:run_job] -- Performing test
SLEPC_TEST_RUNS - Success
2014/12/08 11:26:45 - INFO: [package:run_job] -- Found SLEPc:
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/slepc/qzbng3rjmb5i/lib/libslepc.so
(Required is at least version "3.3")
2014/12/08 11:26:46 - INFO: [package:run_job] -- Performing Test
PARMETIS_TEST_RUNS
2014/12/08 11:26:47 - INFO: [package:run_job] -- Performing Test
PARMETIS_TEST_RUNS - Success
2014/12/08 11:26:47 - INFO: [package:run_job] -- Found ParMETIS:
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/parmetis/r4irzb2fugkt/lib/libparmetis.so;/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/parmetis/r4irzb2fugkt/lib/libmetis.so
(Required is at least version "4.0.2")
2014/12/08 11:26:47 - INFO: [package:run_job] -- Checking for package
'SCOTCH-PT'
2014/12/08 11:26:48 - INFO: [package:run_job] -- Found SCOTCH (version 6.0.0)
2014/12/08 11:26:48 - INFO: [package:run_job] -- Performing test
SCOTCH_TEST_RUNS
2014/12/08 11:26:48 - INFO: [package:run_job] -- Performing test
SCOTCH_TEST_RUNS - Success
2014/12/08 11:26:48 - INFO: [package:run_job] -- Found SCOTCH:
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/scotch/2xawkbuuknog/lib/libptscotch.a;/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/scotch/2xawkbuuknog/lib/libscotch.a;/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/scotch/2xawkbuuknog/lib/libptscotcherr.a
2014/12/08 11:26:48 - INFO: [package:run_job] -- Checking for package 'AMD'
2014/12/08 11:26:49 - INFO: [package:run_job] -- Looking for Fortran sgemm
2014/12/08 11:26:49 - INFO: [package:run_job] -- Looking for Fortran sgemm -
found
2014/12/08 11:26:49 - INFO: [package:run_job] -- Looking for include file
pthread.h
2014/12/08 11:26:49 - INFO: [package:run_job] -- Looking for include file
pthread.h - found
2014/12/08 11:26:49 - INFO: [package:run_job] -- Looking for pthread_create
2014/12/08 11:26:50 - INFO: [package:run_job] -- Looking for pthread_create -
found
2014/12/08 11:26:50 - INFO: [package:run_job] -- Found Threads: TRUE
2014/12/08 11:26:50 - INFO: [package:run_job] -- Checking for package 'UMFPACK'
2014/12/08 11:26:50 - INFO: [package:run_job] -- Checking for package 'AMD'
2014/12/08 11:26:50 - INFO: [package:run_job] -- Checking for package 'CHOLMOD'
2014/12/08 11:26:50 - INFO: [package:run_job] -- Checking for package 'AMD'
2014/12/08 11:26:50 - INFO: [package:run_job] -- A library with BLAS API found.
2014/12/08 11:26:50 - INFO: [package:run_job] -- Looking for Fortran cheev
2014/12/08 11:26:50 - INFO: [package:run_job] -- Looking for Fortran cheev -
found
2014/12/08 11:26:51 - INFO: [package:run_job] -- Performing Test
CHOLMOD_TEST_RUNS
2014/12/08 11:26:51 - INFO: [package:run_job] -- Performing Test
CHOLMOD_TEST_RUNS - Success
2014/12/08 11:26:51 - INFO: [package:run_job] -- Performing Test
UMFPACK_TEST_RUNS
2014/12/08 11:26:52 - INFO: [package:run_job] -- Performing Test
UMFPACK_TEST_RUNS - Success
2014/12/08 11:26:52 - INFO: [package:run_job] -- Checking for package 'CHOLMOD'
2014/12/08 11:26:52 - INFO: [package:run_job] -- Checking for package 'AMD'
2014/12/08 11:26:52 - INFO: [package:run_job] -- A library with BLAS API found.
2014/12/08 11:26:53 - INFO: [package:run_job] -- Found HDF5:
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/hdf5/526csz6keqgw/lib/libhdf5.so;/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/zlib/3el5ccejre7b/lib/libz.so;/usr/lib64/libdl.so;/usr/lib64/libm.so
2014/12/08 11:26:53 - INFO: [package:run_job] -- Found ZLIB:
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/zlib/3el5ccejre7b/lib/libz.so
(found version "1.2.7")
2014/12/08 11:26:53 - INFO: [package:run_job] -- Found VTK:
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/bld/vtk/spx23me2n24g/lib/vtk-5.10
(found version "5.10")
2014/12/08 11:26:53 - INFO: [package:run_job] --
2014/12/08 11:26:53 - INFO: [package:run_job] -- The following optional
packages were found:
2014/12/08 11:26:53 - INFO: [package:run_job] --
-------------------------------------------
2014/12/08 11:26:53 - INFO: [package:run_job] -- (OK) OPENMP
2014/12/08 11:26:53 - INFO: [package:run_job] -- (OK) MPI
2014/12/08 11:26:53 - INFO: [package:run_job] -- (OK) PETSC
2014/12/08 11:26:53 - INFO: [package:run_job] -- (OK) SLEPC
2014/12/08 11:26:53 - INFO: [package:run_job] -- (OK) UMFPACK
2014/12/08 11:26:53 - INFO: [package:run_job] -- (OK) CHOLMOD
2014/12/08 11:26:53 - INFO: [package:run_job] -- (OK) SCOTCH
2014/12/08 11:26:53 - INFO: [package:run_job] -- (OK) PARMETIS
2014/12/08 11:26:53 - INFO: [package:run_job] -- (OK) ZLIB
2014/12/08 11:26:53 - INFO: [package:run_job] -- (OK) PYTHON
2014/12/08 11:26:53 - INFO: [package:run_job] -- (OK) HDF5
2014/12/08 11:26:53 - INFO: [package:run_job] -- (OK) VTK
2014/12/08 11:26:53 - INFO: [package:run_job] --
2014/12/08 11:26:53 - INFO: [package:run_job] -- The following optional
packages were not enabled:
2014/12/08 11:26:53 - INFO: [package:run_job] --
-------------------------------------------------
2014/12/08 11:26:53 - INFO: [package:run_job] -- (--) PETSC4PY
2014/12/08 11:26:53 - INFO: [package:run_job] -- (--) TRILINOS
2014/12/08 11:26:53 - INFO: [package:run_job] -- (--) PASTIX
2014/12/08 11:26:53 - INFO: [package:run_job] -- (--) SPHINX
2014/12/08 11:26:53 - INFO: [package:run_job] -- (--) QT
2014/12/08 11:26:53 - INFO: [package:run_job] --
2014/12/08 11:26:53 - INFO: [package:run_job] --
2014/12/08 11:26:53 - INFO: [package:run_job] -- Generating SWIG interface.
2014/12/08 11:26:53 - INFO: [package:run_job] -- --------------------------
2014/12/08 11:26:57 - INFO: [package:run_job] --
2014/12/08 11:26:57 - INFO: [package:run_job] -- Generating form files in demo,
test, bench and dolfin directories. May take some time...
2014/12/08 11:26:57 - INFO: [package:run_job] --
----------------------------------------------------------------------------------------
2014/12/08 11:28:34 - INFO: [package:run_job] --
2014/12/08 11:28:34 - INFO: [package:run_job] -- Generating CMakeLists.txt
files in demo, test and bench directories
2014/12/08 11:28:34 - INFO: [package:run_job] --
-------------------------------------------------------------------
2014/12/08 11:28:35 - INFO: [package:run_job] --
2014/12/08 11:28:35 - INFO: [package:run_job] -- Download demo and test data.
May take some time...
2014/12/08 11:28:35 - INFO: [package:run_job] --
--------------------------------------------------
2014/12/08 11:29:05 - INFO: [package:run_job] --
2014/12/08 11:29:05 - INFO: [package:run_job] -- Copying demo and test data to
build directory.
2014/12/08 11:29:05 - INFO: [package:run_job] --
----------------------------------------------
2014/12/08 11:29:18 - INFO: [package:run_job] -- Looking for Q_WS_X11
2014/12/08 11:29:18 - INFO: [package:run_job] -- Looking for Q_WS_X11 - found
2014/12/08 11:29:18 - INFO: [package:run_job] -- Looking for Q_WS_WIN
2014/12/08 11:29:18 - INFO: [package:run_job] -- Looking for Q_WS_WIN - not
found
2014/12/08 11:29:18 - INFO: [package:run_job] -- Looking for Q_WS_QWS
2014/12/08 11:29:19 - INFO: [package:run_job] -- Looking for Q_WS_QWS - not
found
2014/12/08 11:29:19 - INFO: [package:run_job] -- Looking for Q_WS_MAC
2014/12/08 11:29:19 - INFO: [package:run_job] -- Looking for Q_WS_MAC - not
found
2014/12/08 11:29:19 - INFO: [package:run_job] -- Found Qt4: /usr/bin/qmake-qt4
(found version "4.6.2")
2014/12/08 11:29:19 - INFO: [package:run_job] -- QT not found, or QT/VTK not
enabled in DOLFIN. Not building demo_plot-qt
2014/12/08 11:29:19 - INFO: [package:run_job] -- Configuring done
2014/12/08 11:29:39 - INFO: [package:run_job] -- Generating done
2014/12/08 11:29:41 - INFO: [package:run_job] CMake Warning:
2014/12/08 11:29:41 - INFO: [package:run_job] Manually-specified variables
were not used by the project:
2014/12/08 11:29:41 - INFO: [package:run_job]
2014/12/08 11:29:41 - INFO: [package:run_job] HDF5_ROOT
2014/12/08 11:29:41 - INFO: [package:run_job] PYTHON_DIR
2014/12/08 11:29:41 - INFO: [package:run_job] ZLIB_DIR
2014/12/08 11:29:41 - INFO: [package:run_job]
2014/12/08 11:29:41 - INFO: [package:run_job]
2014/12/08 11:29:41 - INFO: [package:run_job] -- Build files have been written
to: /panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/_build
2014/12/08 11:29:53 - INFO: [package:run_job] Scanning dependencies of target
dolfin
2014/12/08 11:29:54 - INFO: [package:run_job] [ 1%] Building CXX object
dolfin/CMakeFiles/dolfin.dir/adaptivity/AdaptiveLinearVariationalSolver.cpp.o
2014/12/08 11:29:56 - INFO: [package:run_job] [ 1%] Building CXX object
dolfin/CMakeFiles/dolfin.dir/adaptivity/AdaptiveNonlinearVariationalSolver.cpp.o
2014/12/08 11:29:58 - INFO: [package:run_job] [ 1%] Building CXX object
dolfin/CMakeFiles/dolfin.dir/adaptivity/ErrorControl.cpp.o
2014/12/08 11:30:03 - INFO: [package:run_job] [ 2%] Building CXX object
dolfin/CMakeFiles/dolfin.dir/adaptivity/Extrapolation.cpp.o
2014/12/08 11:30:09 - INFO: [package:run_job] [ 2%] Building CXX object
dolfin/CMakeFiles/dolfin.dir/adaptivity/GenericAdaptiveVariationalSolver.cpp.o
2014/12/08 11:30:11 - INFO: [package:run_job] [ 2%] Building CXX object
dolfin/CMakeFiles/dolfin.dir/adaptivity/GoalFunctional.cpp.o
2014/12/08 11:30:12 - INFO: [package:run_job] [ 3%] Building CXX object
dolfin/CMakeFiles/dolfin.dir/adaptivity/LocalAssembler.cpp.o
2014/12/08 11:30:13 - INFO: [package:run_job] [ 3%] Building CXX object
dolfin/CMakeFiles/dolfin.dir/adaptivity/TimeSeries.cpp.o
2014/12/08 11:30:15 - INFO: [package:run_job] [ 3%] Building CXX object
dolfin/CMakeFiles/dolfin.dir/adaptivity/TimeSeriesHDF5.cpp.o
2014/12/08 11:30:17 - INFO: [package:run_job] [ 5%] Building CXX object
dolfin/CMakeFiles/dolfin.dir/adaptivity/adapt.cpp.o
2014/12/08 11:30:20 - INFO: [package:run_job] [ 5%] Building CXX object
dolfin/CMakeFiles/dolfin.dir/adaptivity/adaptivesolve.cpp.o
2014/12/08 11:30:22 - INFO: [package:run_job] [ 5%] Building CXX object
dolfin/CMakeFiles/dolfin.dir/adaptivity/marking.cpp.o
2014/12/08 11:30:23 - INFO: [package:run_job] [ 6%] Building CXX object
dolfin/CMakeFiles/dolfin.dir/ale/ALE.cpp.o
2014/12/08 11:30:24 - INFO: [package:run_job] [ 6%] Building CXX object
dolfin/CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o
2014/12/08 11:30:25 - INFO: [package:run_job] In file included from
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/ale/HarmonicSmoothing.cpp:22:
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/GlobalParameters.h:
In static member function 'static dolfin::Parameters
dolfin::GlobalParameters::default_parameters()':
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/GlobalParameters.h:84:
error: no matching function for call to 'dolfin::Parameters::add(const char
[21], std::string&, <brace-enclosed initializer list>)'
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:144:
note: candidates are: void dolfin::Parameters::add(std::string, int)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:147:
note: void dolfin::Parameters::add(std::string, int, int, int)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:150:
note: void dolfin::Parameters::add(std::string, double)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:153:
note: void dolfin::Parameters::add(std::string, double,
double, double)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:156:
note: void dolfin::Parameters::add(std::string, std::string)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:159:
note: void dolfin::Parameters::add(std::string, const char*)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:162:
note: void dolfin::Parameters::add(std::string, std::string,
std::set<std::basic_string<char, std::char_traits<char>, std::allocator<char>
>, std::less<std::basic_string<char, std::char_traits<char>,
std::allocator<char> > >, std::allocator<std::basic_string<char,
std::char_traits<char>, std::allocator<char> > > >)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:165:
note: void dolfin::Parameters::add(std::string, const char*,
std::set<std::basic_string<char, std::char_traits<char>, std::allocator<char>
>, std::less<std::basic_string<char, std::char_traits<char>,
std::allocator<char> > >, std::allocator<std::basic_string<char,
std::char_traits<char>, std::allocator<char> > > >)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:168:
note: void dolfin::Parameters::add(std::string, bool)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:171:
note: void dolfin::Parameters::add(const dolfin::Parameters&)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/GlobalParameters.h:91:
error: no matching function for call to 'dolfin::Parameters::add(const char
[11], const char [5], <brace-enclosed initializer list>)'
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:125:
note: candidates are: void dolfin::Parameters::add(std::string, T, T) [with T
= std::initializer_list<const char*>]
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:144:
note: void dolfin::Parameters::add(std::string, int)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:147:
note: void dolfin::Parameters::add(std::string, int, int, int)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:150:
note: void dolfin::Parameters::add(std::string, double)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:153:
note: void dolfin::Parameters::add(std::string, double,
double, double)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:156:
note: void dolfin::Parameters::add(std::string, std::string)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:159:
note: void dolfin::Parameters::add(std::string, const char*)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:162:
note: void dolfin::Parameters::add(std::string, std::string,
std::set<std::basic_string<char, std::char_traits<char>, std::allocator<char>
>, std::less<std::basic_string<char, std::char_traits<char>,
std::allocator<char> > >, std::allocator<std::basic_string<char,
std::char_traits<char>, std::allocator<char> > > >)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:165:
note: void dolfin::Parameters::add(std::string, const char*,
std::set<std::basic_string<char, std::char_traits<char>, std::allocator<char>
>, std::less<std::basic_string<char, std::char_traits<char>,
std::allocator<char> > >, std::allocator<std::basic_string<char,
std::char_traits<char>, std::allocator<char> > > >)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:168:
note: void dolfin::Parameters::add(std::string, bool)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:171:
note: void dolfin::Parameters::add(const dolfin::Parameters&)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/GlobalParameters.h:105:
error: no matching function for call to 'dolfin::Parameters::add(const char
[17], std::string&, <brace-enclosed initializer list>)'
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:144:
note: candidates are: void dolfin::Parameters::add(std::string, int)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:147:
note: void dolfin::Parameters::add(std::string, int, int, int)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:150:
note: void dolfin::Parameters::add(std::string, double)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:153:
note: void dolfin::Parameters::add(std::string, double,
double, double)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:156:
note: void dolfin::Parameters::add(std::string, std::string)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:159:
note: void dolfin::Parameters::add(std::string, const char*)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:162:
note: void dolfin::Parameters::add(std::string, std::string,
std::set<std::basic_string<char, std::char_traits<char>, std::allocator<char>
>, std::less<std::basic_string<char, std::char_traits<char>,
std::allocator<char> > >, std::allocator<std::basic_string<char,
std::char_traits<char>, std::allocator<char> > > >)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:165:
note: void dolfin::Parameters::add(std::string, const char*,
std::set<std::basic_string<char, std::char_traits<char>, std::allocator<char>
>, std::less<std::basic_string<char, std::char_traits<char>,
std::allocator<char> > >, std::allocator<std::basic_string<char,
std::char_traits<char>, std::allocator<char> > > >)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:168:
note: void dolfin::Parameters::add(std::string, bool)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:171:
note: void dolfin::Parameters::add(const dolfin::Parameters&)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/GlobalParameters.h:110:
error: no matching function for call to 'dolfin::Parameters::add(const char
[22], const char [10], <brace-enclosed initializer list>)'
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:125:
note: candidates are: void dolfin::Parameters::add(std::string, T, T) [with T
= std::initializer_list<const char*>]
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:144:
note: void dolfin::Parameters::add(std::string, int)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:147:
note: void dolfin::Parameters::add(std::string, int, int, int)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:150:
note: void dolfin::Parameters::add(std::string, double)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:153:
note: void dolfin::Parameters::add(std::string, double,
double, double)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:156:
note: void dolfin::Parameters::add(std::string, std::string)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:159:
note: void dolfin::Parameters::add(std::string, const char*)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:162:
note: void dolfin::Parameters::add(std::string, std::string,
std::set<std::basic_string<char, std::char_traits<char>, std::allocator<char>
>, std::less<std::basic_string<char, std::char_traits<char>,
std::allocator<char> > >, std::allocator<std::basic_string<char,
std::char_traits<char>, std::allocator<char> > > >)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:165:
note: void dolfin::Parameters::add(std::string, const char*,
std::set<std::basic_string<char, std::char_traits<char>, std::allocator<char>
>, std::less<std::basic_string<char, std::char_traits<char>,
std::allocator<char> > >, std::allocator<std::basic_string<char,
std::char_traits<char>, std::allocator<char> > > >)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:168:
note: void dolfin::Parameters::add(std::string, bool)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:171:
note: void dolfin::Parameters::add(const dolfin::Parameters&)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/GlobalParameters.h:135:
error: no matching function for call to 'dolfin::Parameters::add(const char
[21], const char [20], <brace-enclosed initializer list>)'
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:125:
note: candidates are: void dolfin::Parameters::add(std::string, T, T) [with T
= std::initializer_list<const char*>]
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:144:
note: void dolfin::Parameters::add(std::string, int)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:147:
note: void dolfin::Parameters::add(std::string, int, int, int)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:150:
note: void dolfin::Parameters::add(std::string, double)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:153:
note: void dolfin::Parameters::add(std::string, double,
double, double)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:156:
note: void dolfin::Parameters::add(std::string, std::string)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:159:
note: void dolfin::Parameters::add(std::string, const char*)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:162:
note: void dolfin::Parameters::add(std::string, std::string,
std::set<std::basic_string<char, std::char_traits<char>, std::allocator<char>
>, std::less<std::basic_string<char, std::char_traits<char>,
std::allocator<char> > >, std::allocator<std::basic_string<char,
std::char_traits<char>, std::allocator<char> > > >)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:165:
note: void dolfin::Parameters::add(std::string, const char*,
std::set<std::basic_string<char, std::char_traits<char>, std::allocator<char>
>, std::less<std::basic_string<char, std::char_traits<char>,
std::allocator<char> > >, std::allocator<std::basic_string<char,
std::char_traits<char>, std::allocator<char> > > >)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:168:
note: void dolfin::Parameters::add(std::string, bool)
2014/12/08 11:30:25 - INFO: [package:run_job]
/panfs/roc/groups/5/arnoldd/lil1/.hashdist/tmp/dolfin-4kidvbj2v52z/dolfin/parameter/Parameters.h:171:
note: void dolfin::Parameters::add(const dolfin::Parameters&)
2014/12/08 11:30:26 - INFO: [package:run_job] gmake[2]: ***
[dolfin/CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o] Error 1
2014/12/08 11:30:26 - INFO: [package:run_job] gmake[1]: ***
[dolfin/CMakeFiles/dolfin.dir/all] Error 2
2014/12/08 11:30:26 - INFO: [package:run_job] gmake: *** [all] Error 2
2014/12/08 11:30:26 - ERROR: [package:run_job] Command '[u'/bin/bash',
'_hashdist/build.sh']' returned non-zero exit status 2
2014/12/08 11:30:26 - ERROR: [package:run_job] command failed (code=2); raising
_______________________________________________
fenics mailing list
[email protected]
http://fenicsproject.org/mailman/listinfo/fenics
