Yes, Hari did already contact me, and I suggested to post the question to the fink mailing list. Unfortunately at the moment I have very little time to investigate. FWIW, it builds fine on my iMac G5/10.5.2 too (although not recently testesd).
- Koen. -----Original Message----- >From: Alexander K Hansen <[EMAIL PROTECTED]> >Sent: May 20, 2008 10:01 AM >To: hari jayaram <[EMAIL PROTECTED]> >Cc: [email protected], Koen van der Drift <[EMAIL >PROTECTED]> >Subject: Re: [Fink-beginners] Problem compiling wise2.2 > >Did you contact the maintainer for the Fink package? > >If you can build it by hand, then that does make it a good possibility that >the Fink package needs to be modified, and they're the one to do so >I'll cc him on this. It did work for me on 10.5.2/powerPC. > >On Tuesday 20 May 2008 08:12:31 hari jayaram wrote: >> I was compiling the package on Mac OSX 10.5.2 leopard >> >> Darwin mango.biochem.brandeis.edu 9.2.2 Darwin Kernel Version 9.2.2: Tue >> Mar 4 21:17:34 PST 2008; root:xnu-1228.4.31~1/RELEASE_I386 i386 i386 >> >> The package is part of biopython (biopython-py25) and is called " wise2 >> 2.2.0-3 Intelligent algorithms for DNA" >> >> The error I get is >> unlimit: stacksize: Can't remove limit (Invalid argument) >> >> > make[1]: *** [bin] Error 1 >> > make: *** [all] Error 2 >> > ### execution of /var/tmp/tmp.1.t6Sfqg failed, exit code 2 >> >> Which seems to be caused by the fact that in the Leopard supplied unlimit >> csh . calling just unlimit echoes the error >> unlimit: descriptors: Can't remove limit (Invalid argument) >> Regardless , I contacted the program maintainer and he suggested it might >> be a fink sepecific error. I also got the package downloaded from the wise2 >> website to build just fine >> >> Please can someone tell me how to get around wise2's failure to install and >> this compile error >> >> Thank you >> Hari >> >> > make[1]: *** [bin] Error 1 >> > make: *** [all] Error 2 >> > ### execution of /var/tmp/tmp.1.t6Sfqg failed, exit code 2On Mon, May 19, >> >> 2008 at 8:16 PM, Alexander K Hansen <[EMAIL PROTECTED]> wrote: >> > On Monday 19 May 2008 18:45:04 hari jayaram wrote: >> > > Hi when I was trying to install the biopython suite >> > > I get the following >> > > error when fink tries to install the wise program >> > > >> > > unlimit: stacksize: Can't remove limit (Invalid argument) >> > > make[1]: *** [bin] Error 1 >> > > make: *** [all] Error 2 >> > > ### execution of /var/tmp/tmp.1.t6Sfqg failed, exit code 2 >> > > >> > > >> > > I did contact the writer of the program and he said it seems to be a >> > > fink specific issue >> > > >> > > Also I could separately download and build the program wise 2.2.0.3 >> > > from the wise website and install it in my home directory just fine >> > > >> > > Please can someone tell me how to proceed. >> > > thanks for your help >> > > Hari >> > > >> > > >> > > >> > > >> > > >> > > >> > > mv models/pswdb models/psw models/genewisedb models/estwisedb >> > > models/estwise models/genewise models/dba models/dnal models/genomewise >> > > ./bin >> > > csh welcome.csh >> > > unlimit: stacksize: Can't remove limit (Invalid argument) >> > > make[1]: *** [bin] Error 1 >> > > make: *** [all] Error 2 >> > > ### execution of /var/tmp/tmp.1.t6Sfqg failed, exit code 2 >> > >> > What architecture and OS are you on? > > ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Fink-beginners mailing list [email protected] http://news.gmane.org/gmane.os.apple.fink.beginners
