Hi. I saw this when building bowtie2 on Yosemite with exporter-pm-5.68-1
installed:
make install PREFIX=/sw DESTDIR=/sw/src/fink.build/root-bowtie2-2.2.4-1
help2man --name="wrapper for bowtie2-align" --no-info \
`pwd`/bowtie2 > bowtie2.1
Constant subroutine main::LC_ALL redefined at /sw/lib/perl5/Exporter.pm line 66.
at /sw/bin/help2man line 28.
Prototype mismatch: sub main::LC_ALL () vs none at /sw/lib/perl5/Exporter.pm
line 66.
at /sw/bin/help2man line 28.
help2man --name="building a colorspace index for bowtie2" --no-info \
`pwd`/bowtie2-build > bowtie2-build.1
Constant subroutine main::LC_ALL redefined at /sw/lib/perl5/Exporter.pm line 66.
at /sw/bin/help2man line 28.
Prototype mismatch: sub main::LC_ALL () vs none at /sw/lib/perl5/Exporter.pm
line 66.
at /sw/bin/help2man line 28.
help2man --name="extracts information from a bowtie2 index" --no-info \
`pwd`/bowtie2-inspect > bowtie2-inspect.1
Constant subroutine main::LC_ALL redefined at /sw/lib/perl5/Exporter.pm line 66.
at /sw/bin/help2man line 28.
Prototype mismatch: sub main::LC_ALL () vs none at /sw/lib/perl5/Exporter.pm
line 66.
at /sw/bin/help2man line 28.
help2man --name="ultrafast and memory-efficient tool for aligning sequencing
reads to long reference sequences" --no-info \
`pwd`/bowtie2-align-s> bowtie2-align.1
Constant subroutine main::LC_ALL redefined at /sw/lib/perl5/Exporter.pm line 66.
at /sw/bin/help2man line 28.
Prototype mismatch: sub main::LC_ALL () vs none at /sw/lib/perl5/Exporter.pm
line 66.
at /sw/bin/help2man line 28.
It may be harmless. I was just a bit unsettled to see the Perl functions in
the output. :-)
--
Alexander Hansen, Ph.D.
Fink User Liaison
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