Interestingly, I don't see the error here (10.9), with exporter-pm and 
locale-gettext-pm5162:

        make install PREFIX=/sw DESTDIR=/sw/build.build/root-bowtie2-2.2.4-1
help2man --name="wrapper for bowtie2-align" --no-info \
        `pwd`/bowtie2 > bowtie2.1
help2man --name="building a colorspace index for bowtie2" --no-info \
        `pwd`/bowtie2-build > bowtie2-build.1
help2man --name="extracts information from a bowtie2 index" --no-info \
        `pwd`/bowtie2-inspect > bowtie2-inspect.1
help2man --name="ultrafast and memory-efficient tool for aligning 
sequencing reads to long reference sequences" --no-info \
     `pwd`/bowtie2-align-s> bowtie2-align.1

Hanspeter


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